Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02166 and SMc02165 are separated by 17 nucleotides SMc02165 and SMc02164 are separated by 56 nucleotides SMc02164 and SMc02163 are separated by 132 nucleotides
SMc02166: SMc02166 - dihydroorotase, at 527,870 to 528,913
SMc02166
SMc02165: SMc02165 - orotate phosphoribosyltransferase, at 528,931 to 529,629
SMc02165
SMc02164: SMc02164 - fructokinase, at 529,686 to 530,612
SMc02164
SMc02163: SMc02163 - glucose-6-phosphate isomerase, at 530,745 to 532,370
SMc02163
Position (kb) 529
530
531 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 529.030 kb on + strand, within SMc02165 at 529.065 kb on + strand, within SMc02165 at 529.091 kb on - strand, within SMc02165 at 529.195 kb on - strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.243 kb on + strand, within SMc02165 at 529.244 kb on - strand, within SMc02165 at 529.244 kb on - strand, within SMc02165 at 529.248 kb on - strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.294 kb on + strand, within SMc02165 at 529.295 kb on - strand, within SMc02165 at 529.297 kb on - strand, within SMc02165 at 529.423 kb on + strand, within SMc02165 at 529.424 kb on - strand, within SMc02165 at 529.424 kb on - strand, within SMc02165 at 529.480 kb on + strand, within SMc02165 at 529.480 kb on + strand, within SMc02165 at 529.481 kb on - strand, within SMc02165 at 529.481 kb on - strand, within SMc02165 at 529.665 kb on + strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.666 kb on - strand at 529.851 kb on - strand, within SMc02164 at 530.143 kb on - strand, within SMc02164 at 530.363 kb on + strand, within SMc02164 at 531.586 kb on + strand, within SMc02163
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 529,030 + SMc02165 0.14 -3.0 529,065 + SMc02165 0.19 -2.4 529,091 - SMc02165 0.23 -2.3 529,195 - SMc02165 0.38 +0.6 529,243 + SMc02165 0.45 -0.7 529,243 + SMc02165 0.45 -3.1 529,243 + SMc02165 0.45 -2.1 529,243 + SMc02165 0.45 -2.3 529,243 + SMc02165 0.45 -2.3 529,244 - SMc02165 0.45 +0.6 529,244 - SMc02165 0.45 -3.2 529,248 - SMc02165 0.45 -2.7 529,294 + SMc02165 0.52 -2.3 529,294 + SMc02165 0.52 -3.5 529,294 + SMc02165 0.52 -1.7 529,294 + SMc02165 0.52 +1.6 529,295 - SMc02165 0.52 -1.6 529,297 - SMc02165 0.52 -1.2 529,423 + SMc02165 0.70 -1.6 529,424 - SMc02165 0.71 -0.0 529,424 - SMc02165 0.71 -3.3 529,480 + SMc02165 0.79 -4.2 529,480 + SMc02165 0.79 -4.3 529,481 - SMc02165 0.79 -2.2 529,481 - SMc02165 0.79 -0.7 529,665 + -0.2 529,666 - -1.3 529,666 - -1.3 529,666 - +0.3 529,666 - -0.7 529,666 - +0.2 529,851 - SMc02164 0.18 -1.2 530,143 - SMc02164 0.49 -1.2 530,363 + SMc02164 0.73 -0.0 531,586 + SMc02163 0.52 +1.6
Or see this region's nucleotide sequence