Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01613 and SMc01614 are separated by 37 nucleotides SMc01614 and SMc01615 overlap by 4 nucleotides SMc01615 and SMc01616 are separated by 93 nucleotides
SMc01613: SMc01613 - ribose-5-phosphate isomerase B, at 2,404,360 to 2,404,797
SMc01613
SMc01614: SMc01614 - triosephosphate isomerase, at 2,404,835 to 2,405,602
SMc01614
SMc01615: SMc01615 - transcriptional regulator, at 2,405,599 to 2,406,384
SMc01615
SMc01616: SMc01616 - D-erythrulose-1-phosphate dehydrogenase, at 2,406,478 to 2,407,416
SMc01616
Position (kb)
2404
2405
2406 Strain fitness (log2 ratio)
-2
-1
0
1 at 2404.172 kb on + strand at 2404.172 kb on + strand at 2404.194 kb on + strand at 2404.224 kb on + strand at 2404.224 kb on + strand at 2404.224 kb on + strand at 2404.224 kb on + strand at 2404.224 kb on + strand at 2404.224 kb on + strand at 2404.224 kb on + strand at 2404.225 kb on - strand at 2404.225 kb on - strand at 2404.225 kb on - strand at 2404.225 kb on - strand at 2404.225 kb on - strand at 2404.362 kb on - strand at 2404.362 kb on - strand at 2404.443 kb on + strand, within SMc01613 at 2404.444 kb on - strand, within SMc01613 at 2404.538 kb on + strand, within SMc01613 at 2404.539 kb on - strand, within SMc01613 at 2404.623 kb on + strand, within SMc01613 at 2404.682 kb on + strand, within SMc01613 at 2404.682 kb on + strand, within SMc01613 at 2404.683 kb on - strand, within SMc01613 at 2404.813 kb on + strand at 2404.971 kb on + strand, within SMc01614 at 2405.044 kb on - strand, within SMc01614 at 2405.044 kb on - strand, within SMc01614 at 2405.060 kb on + strand, within SMc01614 at 2405.094 kb on + strand, within SMc01614 at 2405.174 kb on - strand, within SMc01614 at 2405.615 kb on - strand at 2405.778 kb on - strand, within SMc01615 at 2405.778 kb on - strand, within SMc01615 at 2405.952 kb on - strand, within SMc01615 at 2406.046 kb on - strand, within SMc01615 at 2406.439 kb on + strand at 2406.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 2,404,172 + +0.1 2,404,172 + -0.8 2,404,194 + +0.5 2,404,224 + -0.2 2,404,224 + -0.5 2,404,224 + -0.9 2,404,224 + -0.5 2,404,224 + +0.5 2,404,224 + -0.6 2,404,224 + -0.4 2,404,225 - +0.3 2,404,225 - -0.6 2,404,225 - +0.1 2,404,225 - -1.4 2,404,225 - +0.0 2,404,362 - -0.2 2,404,362 - +0.4 2,404,443 + SMc01613 0.19 -0.6 2,404,444 - SMc01613 0.19 -0.7 2,404,538 + SMc01613 0.41 -0.4 2,404,539 - SMc01613 0.41 -0.9 2,404,623 + SMc01613 0.60 +0.2 2,404,682 + SMc01613 0.74 -0.9 2,404,682 + SMc01613 0.74 -1.3 2,404,683 - SMc01613 0.74 -2.0 2,404,813 + +1.0 2,404,971 + SMc01614 0.18 -0.4 2,405,044 - SMc01614 0.27 +0.4 2,405,044 - SMc01614 0.27 -0.1 2,405,060 + SMc01614 0.29 -0.3 2,405,094 + SMc01614 0.34 +0.2 2,405,174 - SMc01614 0.44 +0.5 2,405,615 - -0.5 2,405,778 - SMc01615 0.23 -0.3 2,405,778 - SMc01615 0.23 -0.3 2,405,952 - SMc01615 0.45 +1.2 2,406,046 - SMc01615 0.57 -0.4 2,406,439 + +1.2 2,406,440 - +0.1
Or see this region's nucleotide sequence