Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01090 and SMc01089 are separated by 152 nucleotides SMc01089 and SMc01732 are separated by 2 nucleotides
SMc01090: SMc01090 - ATP-dependent RNA helicase, at 467,773 to 469,665
SMc01090
SMc01089: SMc01089 - hypothetical protein, at 469,818 to 470,204
SMc01089
SMc01732: SMc01732 - 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase, at 470,207 to 471,097
SMc01732
Position (kb) 469
470
471 Strain fitness (log2 ratio) -2
-1
0
1
2 at 468.942 kb on - strand, within SMc01090 at 469.004 kb on + strand, within SMc01090 at 469.068 kb on - strand, within SMc01090 at 469.228 kb on + strand, within SMc01090 at 469.231 kb on - strand, within SMc01090 at 469.252 kb on - strand, within SMc01090 at 469.374 kb on - strand, within SMc01090 at 469.765 kb on + strand at 469.781 kb on + strand at 469.782 kb on - strand at 469.785 kb on + strand at 469.785 kb on + strand at 469.785 kb on + strand at 469.786 kb on - strand at 469.786 kb on - strand at 469.786 kb on - strand at 469.959 kb on - strand, within SMc01089 at 471.103 kb on - strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.109 kb on + strand at 471.110 kb on - strand at 471.142 kb on - strand at 471.142 kb on - strand at 471.142 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 468,942 - SMc01090 0.62 +1.9 469,004 + SMc01090 0.65 +0.3 469,068 - SMc01090 0.68 -0.6 469,228 + SMc01090 0.77 +0.1 469,231 - SMc01090 0.77 +0.4 469,252 - SMc01090 0.78 +0.5 469,374 - SMc01090 0.85 -1.0 469,765 + -1.7 469,781 + -1.4 469,782 - +0.8 469,785 + +0.3 469,785 + +1.0 469,785 + -0.5 469,786 - +0.6 469,786 - -0.2 469,786 - +0.2 469,959 - SMc01089 0.36 +0.4 471,103 - +0.3 471,109 + +0.2 471,109 + -0.5 471,109 + -0.2 471,109 + -1.9 471,110 - -0.8 471,142 - +0.2 471,142 - -0.4 471,142 - -0.1
Or see this region's nucleotide sequence