Strain Fitness in Sinorhizobium meliloti 1021 around SMc01035

Experiment: pipercolic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01033 and SMc01034 overlap by 4 nucleotidesSMc01034 and SMc01035 are separated by 17 nucleotidesSMc01035 and SMc01036 are separated by 75 nucleotidesSMc01036 and SMc01037 are separated by 134 nucleotides SMc01033: SMc01033 - arylesterase, at 1,559,806 to 1,560,447 SMc01033 SMc01034: SMc01034 - hypothetical protein, at 1,560,444 to 1,561,031 SMc01034 SMc01035: SMc01035 - dihydrolipoamide dehydrogenase, at 1,561,049 to 1,562,494 SMc01035 SMc01036: SMc01036 - hypothetical protein, at 1,562,570 to 1,562,821 SMc01036 SMc01037: SMc01037 - lipoyl synthase, at 1,562,956 to 1,563,924 SMc01037 Position (kb) 1561 1562 1563Strain fitness (log2 ratio) -1 0 1 2at 1560.693 kb on + strand, within SMc01034at 1560.816 kb on + strand, within SMc01034at 1562.481 kb on + strandat 1562.482 kb on - strandat 1562.550 kb on + strandat 1562.551 kb on - strandat 1562.587 kb on - strandat 1562.590 kb on + strandat 1562.590 kb on + strandat 1562.591 kb on - strandat 1562.591 kb on - strandat 1562.739 kb on - strand, within SMc01036at 1562.739 kb on - strand, within SMc01036at 1562.894 kb on + strandat 1562.894 kb on + strandat 1562.894 kb on + strandat 1562.894 kb on + strandat 1562.896 kb on + strandat 1562.941 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction pipercolic (C)
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1,560,693 + SMc01034 0.42 -0.2
1,560,816 + SMc01034 0.63 -0.3
1,562,481 + +0.1
1,562,482 - +0.4
1,562,550 + -1.5
1,562,551 - +2.1
1,562,587 - +0.7
1,562,590 + -0.2
1,562,590 + +1.4
1,562,591 - -1.0
1,562,591 - +0.3
1,562,739 - SMc01036 0.67 +0.4
1,562,739 - SMc01036 0.67 -0.3
1,562,894 + -0.9
1,562,894 + -0.5
1,562,894 + -0.9
1,562,894 + +0.8
1,562,896 + -0.0
1,562,941 + -0.9

Or see this region's nucleotide sequence