Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01033 and SMc01034 overlap by 4 nucleotides SMc01034 and SMc01035 are separated by 17 nucleotides SMc01035 and SMc01036 are separated by 75 nucleotides SMc01036 and SMc01037 are separated by 134 nucleotides
SMc01033: SMc01033 - arylesterase, at 1,559,806 to 1,560,447
SMc01033
SMc01034: SMc01034 - hypothetical protein, at 1,560,444 to 1,561,031
SMc01034
SMc01035: SMc01035 - dihydrolipoamide dehydrogenase, at 1,561,049 to 1,562,494
SMc01035
SMc01036: SMc01036 - hypothetical protein, at 1,562,570 to 1,562,821
SMc01036
SMc01037: SMc01037 - lipoyl synthase, at 1,562,956 to 1,563,924
SMc01037
Position (kb)
1561
1562
1563 Strain fitness (log2 ratio)
-1
0
1
2 at 1560.693 kb on + strand, within SMc01034 at 1560.816 kb on + strand, within SMc01034 at 1562.481 kb on + strand at 1562.482 kb on - strand at 1562.550 kb on + strand at 1562.551 kb on - strand at 1562.587 kb on - strand at 1562.590 kb on + strand at 1562.590 kb on + strand at 1562.591 kb on - strand at 1562.591 kb on - strand at 1562.739 kb on - strand, within SMc01036 at 1562.739 kb on - strand, within SMc01036 at 1562.894 kb on + strand at 1562.894 kb on + strand at 1562.894 kb on + strand at 1562.894 kb on + strand at 1562.896 kb on + strand at 1562.941 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 1,560,693 + SMc01034 0.42 -0.2 1,560,816 + SMc01034 0.63 -0.3 1,562,481 + +0.1 1,562,482 - +0.4 1,562,550 + -1.5 1,562,551 - +2.1 1,562,587 - +0.7 1,562,590 + -0.2 1,562,590 + +1.4 1,562,591 - -1.0 1,562,591 - +0.3 1,562,739 - SMc01036 0.67 +0.4 1,562,739 - SMc01036 0.67 -0.3 1,562,894 + -0.9 1,562,894 + -0.5 1,562,894 + -0.9 1,562,894 + +0.8 1,562,896 + -0.0 1,562,941 + -0.9
Or see this region's nucleotide sequence