Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00885 and SMc00884 are separated by 364 nucleotides SMc00884 and SMc00883 are separated by 90 nucleotides SMc00883 and SMc00882 overlap by 4 nucleotides
SMc00885: SMc00885 - transmembrane signal peptide protein, at 900,992 to 901,630
SMc00885
SMc00884: SMc00884 - dihydroxy-acid dehydratase, at 901,995 to 903,719
SMc00884
SMc00883: SMc00883 - L-arabinolactonase/D-galactonolactonase (EC 3.1.1.15; EC 3.1.1.25) <small>(from data)</small>, at 903,810 to 904,694
SMc00883
SMc00882: SMc00882 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 904,691 to 905,329
SMc00882
Position (kb) 901
902
903
904 Strain fitness (log2 ratio) -2
-1
0
1
2 at 901.036 kb on + strand at 901.037 kb on - strand at 901.336 kb on - strand, within SMc00885 at 901.352 kb on - strand, within SMc00885 at 901.353 kb on + strand, within SMc00885 at 901.353 kb on + strand, within SMc00885 at 901.353 kb on + strand, within SMc00885 at 901.353 kb on + strand, within SMc00885 at 901.353 kb on + strand, within SMc00885 at 901.354 kb on - strand, within SMc00885 at 901.354 kb on - strand, within SMc00885 at 901.354 kb on - strand, within SMc00885 at 901.395 kb on + strand, within SMc00885 at 901.395 kb on + strand, within SMc00885 at 901.395 kb on + strand, within SMc00885 at 901.395 kb on + strand, within SMc00885 at 901.396 kb on - strand, within SMc00885 at 901.613 kb on + strand at 901.613 kb on + strand at 901.613 kb on + strand at 901.614 kb on - strand at 901.614 kb on - strand at 901.614 kb on - strand at 901.615 kb on + strand at 901.615 kb on + strand at 901.615 kb on + strand at 901.616 kb on - strand at 901.616 kb on - strand at 901.616 kb on - strand at 901.616 kb on - strand at 901.616 kb on - strand at 901.616 kb on - strand at 901.616 kb on - strand at 901.616 kb on - strand at 901.616 kb on - strand at 901.928 kb on + strand at 901.929 kb on - strand at 901.929 kb on - strand at 901.980 kb on + strand at 901.980 kb on + strand at 901.981 kb on - strand at 901.996 kb on + strand at 901.996 kb on + strand at 901.997 kb on - strand at 901.997 kb on - strand at 902.086 kb on + strand at 902.095 kb on + strand at 902.095 kb on + strand at 902.095 kb on + strand at 902.096 kb on - strand at 902.392 kb on + strand, within SMc00884 at 902.497 kb on + strand, within SMc00884 at 902.497 kb on + strand, within SMc00884 at 902.498 kb on - strand, within SMc00884 at 902.498 kb on - strand, within SMc00884 at 902.645 kb on - strand, within SMc00884 at 902.645 kb on - strand, within SMc00884 at 902.776 kb on + strand, within SMc00884 at 902.776 kb on + strand, within SMc00884 at 902.776 kb on + strand, within SMc00884 at 902.776 kb on + strand, within SMc00884 at 902.777 kb on - strand, within SMc00884 at 902.856 kb on - strand, within SMc00884 at 903.382 kb on + strand, within SMc00884 at 903.399 kb on + strand, within SMc00884 at 903.537 kb on - strand, within SMc00884 at 903.582 kb on + strand at 903.811 kb on + strand at 903.811 kb on + strand at 903.812 kb on - strand at 903.994 kb on + strand, within SMc00883 at 904.022 kb on + strand, within SMc00883 at 904.024 kb on + strand, within SMc00883 at 904.024 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.167 kb on + strand, within SMc00883 at 904.168 kb on - strand, within SMc00883 at 904.265 kb on + strand, within SMc00883 at 904.265 kb on + strand, within SMc00883 at 904.266 kb on - strand, within SMc00883 at 904.300 kb on + strand, within SMc00883 at 904.300 kb on + strand, within SMc00883 at 904.300 kb on + strand, within SMc00883 at 904.301 kb on - strand, within SMc00883 at 904.586 kb on + strand, within SMc00883 at 904.586 kb on + strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.587 kb on - strand, within SMc00883 at 904.707 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 901,036 + -0.3 901,037 - +0.0 901,336 - SMc00885 0.54 +0.1 901,352 - SMc00885 0.56 -0.8 901,353 + SMc00885 0.56 -0.1 901,353 + SMc00885 0.56 +0.9 901,353 + SMc00885 0.56 -1.0 901,353 + SMc00885 0.56 +0.3 901,353 + SMc00885 0.56 +0.1 901,354 - SMc00885 0.57 -2.1 901,354 - SMc00885 0.57 +0.1 901,354 - SMc00885 0.57 +1.2 901,395 + SMc00885 0.63 +0.3 901,395 + SMc00885 0.63 -0.5 901,395 + SMc00885 0.63 -1.2 901,395 + SMc00885 0.63 +0.6 901,396 - SMc00885 0.63 +0.2 901,613 + -0.7 901,613 + +2.0 901,613 + -0.2 901,614 - -1.2 901,614 - -0.9 901,614 - -0.3 901,615 + +0.0 901,615 + -0.4 901,615 + -0.2 901,616 - +0.7 901,616 - -0.2 901,616 - +0.2 901,616 - +0.4 901,616 - +0.8 901,616 - -0.2 901,616 - -0.6 901,616 - +0.5 901,616 - -0.9 901,928 + +0.9 901,929 - +0.0 901,929 - +0.2 901,980 + -0.1 901,980 + +1.4 901,981 - -0.3 901,996 + +0.7 901,996 + +0.4 901,997 - -1.2 901,997 - +0.4 902,086 + -0.0 902,095 + +0.3 902,095 + -0.3 902,095 + +0.6 902,096 - -1.3 902,392 + SMc00884 0.23 +0.1 902,497 + SMc00884 0.29 -0.5 902,497 + SMc00884 0.29 -0.4 902,498 - SMc00884 0.29 -0.9 902,498 - SMc00884 0.29 -0.6 902,645 - SMc00884 0.38 -0.3 902,645 - SMc00884 0.38 -0.9 902,776 + SMc00884 0.45 +0.2 902,776 + SMc00884 0.45 +0.3 902,776 + SMc00884 0.45 -1.0 902,776 + SMc00884 0.45 -0.4 902,777 - SMc00884 0.45 -0.5 902,856 - SMc00884 0.50 +0.9 903,382 + SMc00884 0.80 -0.6 903,399 + SMc00884 0.81 -0.2 903,537 - SMc00884 0.89 -0.1 903,582 + -0.3 903,811 + -0.6 903,811 + -0.3 903,812 - -0.0 903,994 + SMc00883 0.21 +1.4 904,022 + SMc00883 0.24 +0.9 904,024 + SMc00883 0.24 +0.4 904,024 + SMc00883 0.24 +0.5 904,167 + SMc00883 0.40 +0.5 904,167 + SMc00883 0.40 -0.1 904,167 + SMc00883 0.40 +0.7 904,167 + SMc00883 0.40 -0.8 904,168 - SMc00883 0.40 -0.9 904,265 + SMc00883 0.51 -0.2 904,265 + SMc00883 0.51 -0.4 904,266 - SMc00883 0.52 +0.1 904,300 + SMc00883 0.55 +0.9 904,300 + SMc00883 0.55 +0.5 904,300 + SMc00883 0.55 -0.3 904,301 - SMc00883 0.55 +0.3 904,586 + SMc00883 0.88 -0.2 904,586 + SMc00883 0.88 -0.5 904,587 - SMc00883 0.88 +0.1 904,587 - SMc00883 0.88 +0.3 904,587 - SMc00883 0.88 -0.0 904,587 - SMc00883 0.88 -0.0 904,707 + +0.4
Or see this region's nucleotide sequence