Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00799 and SMc00800 are separated by 110 nucleotides SMc00800 and SMc00801 are separated by 315 nucleotides SMc00801 and SMc00802 are separated by 201 nucleotides SMc00802 and SMc00803 are separated by 260 nucleotides
SMc00799: SMc00799 - hypothetical protein, at 819,147 to 819,719
SMc00799
SMc00800: SMc00800 - hypothetical protein, at 819,830 to 820,273
SMc00800
SMc00801: SMc00801 - hypothetical protein, at 820,589 to 821,245
SMc00801
SMc00802: SMc00802 - hypothetical protein, at 821,447 to 821,812
SMc00802
SMc00803: SMc00803 - hypothetical protein, at 822,073 to 822,888
SMc00803
Position (kb) 820
821
822 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 819.674 kb on - strand at 819.763 kb on + strand at 819.763 kb on + strand at 819.764 kb on - strand at 819.764 kb on - strand at 819.764 kb on - strand at 819.831 kb on + strand at 819.971 kb on - strand, within SMc00800 at 820.007 kb on - strand, within SMc00800 at 820.278 kb on + strand at 820.278 kb on + strand at 820.278 kb on + strand at 820.278 kb on + strand at 820.279 kb on - strand at 820.279 kb on - strand at 820.279 kb on - strand at 820.279 kb on - strand at 820.279 kb on - strand at 820.279 kb on - strand at 820.279 kb on - strand at 820.323 kb on + strand at 820.323 kb on + strand at 820.323 kb on + strand at 820.323 kb on + strand at 820.323 kb on + strand at 820.323 kb on + strand at 820.324 kb on - strand at 820.324 kb on - strand at 820.363 kb on - strand at 820.375 kb on - strand at 820.375 kb on - strand at 820.375 kb on - strand at 820.641 kb on + strand at 820.641 kb on + strand at 820.642 kb on - strand at 820.642 kb on - strand at 820.658 kb on + strand, within SMc00801 at 820.737 kb on - strand, within SMc00801 at 820.737 kb on - strand, within SMc00801 at 820.739 kb on + strand, within SMc00801 at 820.750 kb on - strand, within SMc00801 at 820.785 kb on - strand, within SMc00801 at 820.854 kb on - strand, within SMc00801 at 820.872 kb on - strand, within SMc00801 at 821.299 kb on - strand at 821.327 kb on + strand at 821.328 kb on - strand at 821.351 kb on + strand at 821.411 kb on + strand at 821.411 kb on + strand at 821.478 kb on + strand at 821.629 kb on + strand, within SMc00802 at 821.902 kb on + strand at 821.903 kb on - strand at 821.903 kb on - strand at 821.940 kb on + strand at 821.940 kb on + strand at 821.955 kb on - strand at 822.086 kb on + strand at 822.155 kb on + strand, within SMc00803 at 822.155 kb on + strand, within SMc00803 at 822.155 kb on + strand, within SMc00803 at 822.155 kb on + strand, within SMc00803 at 822.156 kb on - strand, within SMc00803 at 822.166 kb on + strand, within SMc00803 at 822.166 kb on + strand, within SMc00803 at 822.189 kb on - strand, within SMc00803 at 822.198 kb on - strand, within SMc00803 at 822.207 kb on - strand, within SMc00803
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 819,674 - +0.6 819,763 + +1.5 819,763 + +0.3 819,764 - -0.1 819,764 - +0.7 819,764 - -0.1 819,831 + -0.1 819,971 - SMc00800 0.32 +0.9 820,007 - SMc00800 0.40 +0.5 820,278 + +0.5 820,278 + +0.5 820,278 + +0.7 820,278 + -0.4 820,279 - +0.2 820,279 - +0.2 820,279 - -0.1 820,279 - -0.6 820,279 - +0.4 820,279 - +0.3 820,279 - -0.1 820,323 + -0.3 820,323 + +0.5 820,323 + -1.2 820,323 + +0.2 820,323 + -1.5 820,323 + -1.4 820,324 - -0.1 820,324 - -0.3 820,363 - +0.1 820,375 - +0.4 820,375 - +0.1 820,375 - -0.6 820,641 + +0.2 820,641 + -0.6 820,642 - -0.0 820,642 - +0.2 820,658 + SMc00801 0.11 +0.4 820,737 - SMc00801 0.23 +2.6 820,737 - SMc00801 0.23 +0.9 820,739 + SMc00801 0.23 -0.1 820,750 - SMc00801 0.25 +0.0 820,785 - SMc00801 0.30 +4.5 820,854 - SMc00801 0.40 +0.5 820,872 - SMc00801 0.43 +1.1 821,299 - +0.0 821,327 + -1.0 821,328 - -1.5 821,351 + +0.3 821,411 + -0.2 821,411 + +0.8 821,478 + +0.5 821,629 + SMc00802 0.50 +0.2 821,902 + +0.8 821,903 - -0.3 821,903 - +0.8 821,940 + -0.1 821,940 + -0.1 821,955 - +0.2 822,086 + +0.1 822,155 + SMc00803 0.10 +0.6 822,155 + SMc00803 0.10 +0.7 822,155 + SMc00803 0.10 +0.2 822,155 + SMc00803 0.10 +0.4 822,156 - SMc00803 0.10 +0.2 822,166 + SMc00803 0.11 +0.2 822,166 + SMc00803 0.11 +0.3 822,189 - SMc00803 0.14 -1.1 822,198 - SMc00803 0.15 +0.7 822,207 - SMc00803 0.16 -0.1
Or see this region's nucleotide sequence