Strain Fitness in Sinorhizobium meliloti 1021 around SMc00511

Experiment: pipercolic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00512 and SMc00511 are separated by 62 nucleotidesSMc00511 and SMc00510 overlap by 4 nucleotidesSMc00510 and SMc00509 overlap by 1 nucleotides SMc00512: SMc00512 - hypothetical protein, at 1,900,802 to 1,901,806 SMc00512 SMc00511: SMc00511 - D-ribulose-5-phosphate 3-epimerase, at 1,901,869 to 1,902,549 SMc00511 SMc00510: SMc00510 - hypothetical protein, at 1,902,546 to 1,903,283 SMc00510 SMc00509: SMc00509 - hypothetical protein, at 1,903,283 to 1,903,840 SMc00509 Position (kb) 1901 1902 1903Strain fitness (log2 ratio) -2 -1 0 1at 1900.935 kb on + strand, within SMc00512at 1900.936 kb on - strand, within SMc00512at 1900.936 kb on - strand, within SMc00512at 1901.307 kb on + strand, within SMc00512at 1901.308 kb on - strand, within SMc00512at 1901.308 kb on - strand, within SMc00512at 1901.560 kb on + strand, within SMc00512at 1901.617 kb on + strand, within SMc00512at 1901.618 kb on - strand, within SMc00512at 1901.749 kb on - strandat 1901.750 kb on + strandat 1901.750 kb on + strandat 1901.751 kb on - strandat 1901.751 kb on - strandat 1901.842 kb on + strandat 1901.843 kb on - strandat 1902.137 kb on + strand, within SMc00511at 1902.138 kb on - strand, within SMc00511at 1902.138 kb on - strand, within SMc00511at 1902.253 kb on + strand, within SMc00511at 1902.253 kb on + strand, within SMc00511at 1902.253 kb on + strand, within SMc00511at 1902.254 kb on - strand, within SMc00511at 1902.618 kb on + strandat 1902.678 kb on + strand, within SMc00510at 1902.678 kb on + strand, within SMc00510at 1902.683 kb on + strand, within SMc00510at 1902.720 kb on + strand, within SMc00510at 1902.720 kb on + strand, within SMc00510at 1902.720 kb on + strand, within SMc00510at 1902.720 kb on + strand, within SMc00510at 1902.721 kb on - strand, within SMc00510at 1902.721 kb on - strand, within SMc00510at 1902.852 kb on + strand, within SMc00510at 1902.888 kb on + strand, within SMc00510at 1902.888 kb on + strand, within SMc00510at 1902.888 kb on + strand, within SMc00510at 1902.889 kb on - strand, within SMc00510at 1902.889 kb on - strand, within SMc00510at 1902.889 kb on - strand, within SMc00510at 1902.889 kb on - strand, within SMc00510at 1902.889 kb on - strand, within SMc00510at 1902.889 kb on - strand, within SMc00510at 1902.890 kb on + strand, within SMc00510at 1902.890 kb on + strand, within SMc00510at 1902.890 kb on + strand, within SMc00510at 1902.890 kb on + strand, within SMc00510at 1902.891 kb on - strand, within SMc00510at 1902.891 kb on - strand, within SMc00510at 1902.933 kb on + strand, within SMc00510at 1902.933 kb on + strand, within SMc00510at 1902.933 kb on + strand, within SMc00510at 1902.934 kb on - strand, within SMc00510at 1902.934 kb on - strand, within SMc00510at 1902.972 kb on + strand, within SMc00510at 1902.973 kb on - strand, within SMc00510at 1902.973 kb on - strand, within SMc00510at 1902.973 kb on - strand, within SMc00510at 1903.093 kb on + strand, within SMc00510at 1903.093 kb on + strand, within SMc00510at 1903.456 kb on + strand, within SMc00509at 1903.457 kb on - strand, within SMc00509

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Per-strain Table

Position Strand Gene LocusTag Fraction pipercolic (C)
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1,900,935 + SMc00512 0.13 +0.5
1,900,936 - SMc00512 0.13 -0.0
1,900,936 - SMc00512 0.13 +0.5
1,901,307 + SMc00512 0.50 -1.1
1,901,308 - SMc00512 0.50 +0.4
1,901,308 - SMc00512 0.50 +1.2
1,901,560 + SMc00512 0.75 +0.4
1,901,617 + SMc00512 0.81 -0.9
1,901,618 - SMc00512 0.81 +0.4
1,901,749 - -0.8
1,901,750 + -0.2
1,901,750 + -1.9
1,901,751 - -0.6
1,901,751 - +1.5
1,901,842 + +0.1
1,901,843 - -0.0
1,902,137 + SMc00511 0.39 +0.0
1,902,138 - SMc00511 0.40 +0.0
1,902,138 - SMc00511 0.40 -1.0
1,902,253 + SMc00511 0.56 -0.3
1,902,253 + SMc00511 0.56 -0.2
1,902,253 + SMc00511 0.56 -0.4
1,902,254 - SMc00511 0.57 +0.8
1,902,618 + -0.0
1,902,678 + SMc00510 0.18 +0.3
1,902,678 + SMc00510 0.18 -0.1
1,902,683 + SMc00510 0.19 -0.3
1,902,720 + SMc00510 0.24 +0.5
1,902,720 + SMc00510 0.24 -1.1
1,902,720 + SMc00510 0.24 +0.5
1,902,720 + SMc00510 0.24 -0.2
1,902,721 - SMc00510 0.24 +1.7
1,902,721 - SMc00510 0.24 +0.5
1,902,852 + SMc00510 0.41 +0.2
1,902,888 + SMc00510 0.46 +0.5
1,902,888 + SMc00510 0.46 -0.5
1,902,888 + SMc00510 0.46 +0.1
1,902,889 - SMc00510 0.46 +0.5
1,902,889 - SMc00510 0.46 +0.4
1,902,889 - SMc00510 0.46 +1.1
1,902,889 - SMc00510 0.46 +0.2
1,902,889 - SMc00510 0.46 -0.1
1,902,889 - SMc00510 0.46 +0.3
1,902,890 + SMc00510 0.47 +0.1
1,902,890 + SMc00510 0.47 -0.1
1,902,890 + SMc00510 0.47 +0.7
1,902,890 + SMc00510 0.47 +0.1
1,902,891 - SMc00510 0.47 +0.3
1,902,891 - SMc00510 0.47 -1.2
1,902,933 + SMc00510 0.52 -1.0
1,902,933 + SMc00510 0.52 +0.1
1,902,933 + SMc00510 0.52 +1.7
1,902,934 - SMc00510 0.53 +0.1
1,902,934 - SMc00510 0.53 +0.5
1,902,972 + SMc00510 0.58 +0.9
1,902,973 - SMc00510 0.58 -0.7
1,902,973 - SMc00510 0.58 +0.1
1,902,973 - SMc00510 0.58 +0.0
1,903,093 + SMc00510 0.74 +0.0
1,903,093 + SMc00510 0.74 -0.2
1,903,456 + SMc00509 0.31 -0.4
1,903,457 - SMc00509 0.31 +0.2

Or see this region's nucleotide sequence