Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00344 and SMc00345 are separated by 179 nucleotides SMc00345 and SMc00346 are separated by 202 nucleotides SMc00346 and SMc00347 are separated by 93 nucleotides
SMc00344: SMc00344 - hypothetical protein, at 301,029 to 301,319
SMc00344
SMc00345: SMc00345 - hypothetical protein, at 301,499 to 301,780
SMc00345
SMc00346: SMc00346 - hypothetical protein, at 301,983 to 302,435
SMc00346
SMc00347: SMc00347 - nucleoside diphosphate kinase regulator, at 302,529 to 302,936
SMc00347
Position (kb) 301
302 Strain fitness (log2 ratio) -1
0
1 at 300.585 kb on + strand at 301.044 kb on + strand at 301.044 kb on + strand at 301.045 kb on - strand at 301.045 kb on - strand at 301.045 kb on - strand at 301.077 kb on + strand at 301.195 kb on + strand, within SMc00344 at 301.196 kb on - strand, within SMc00344 at 301.265 kb on - strand, within SMc00344 at 301.316 kb on - strand at 301.316 kb on - strand at 301.500 kb on + strand at 301.570 kb on + strand, within SMc00345 at 301.570 kb on + strand, within SMc00345 at 301.571 kb on - strand, within SMc00345 at 301.571 kb on - strand, within SMc00345 at 301.679 kb on - strand, within SMc00345 at 301.749 kb on + strand, within SMc00345 at 301.750 kb on - strand, within SMc00345 at 302.057 kb on + strand at 302.173 kb on - strand, within SMc00346 at 302.173 kb on - strand, within SMc00346 at 302.227 kb on + strand, within SMc00346 at 302.227 kb on + strand, within SMc00346 at 302.228 kb on - strand, within SMc00346 at 302.228 kb on - strand, within SMc00346 at 302.298 kb on + strand, within SMc00346 at 302.564 kb on + strand at 302.564 kb on + strand at 302.565 kb on - strand at 302.565 kb on - strand at 302.571 kb on + strand, within SMc00347 at 302.572 kb on - strand, within SMc00347 at 302.755 kb on - strand, within SMc00347
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 300,585 + -0.7 301,044 + -0.3 301,044 + -0.2 301,045 - +0.2 301,045 - +0.5 301,045 - -0.1 301,077 + +0.1 301,195 + SMc00344 0.57 +0.1 301,196 - SMc00344 0.57 -0.2 301,265 - SMc00344 0.81 -0.2 301,316 - +0.2 301,316 - +0.1 301,500 + -0.7 301,570 + SMc00345 0.25 +1.5 301,570 + SMc00345 0.25 +0.6 301,571 - SMc00345 0.26 +0.3 301,571 - SMc00345 0.26 +0.5 301,679 - SMc00345 0.64 +0.2 301,749 + SMc00345 0.89 +1.6 301,750 - SMc00345 0.89 -0.4 302,057 + -0.9 302,173 - SMc00346 0.42 -0.4 302,173 - SMc00346 0.42 +0.5 302,227 + SMc00346 0.54 -0.5 302,227 + SMc00346 0.54 +0.0 302,228 - SMc00346 0.54 +0.1 302,228 - SMc00346 0.54 +0.1 302,298 + SMc00346 0.70 +0.5 302,564 + -0.1 302,564 + +0.3 302,565 - -0.4 302,565 - -1.2 302,571 + SMc00347 0.10 -0.5 302,572 - SMc00347 0.11 +1.0 302,755 - SMc00347 0.55 +1.2
Or see this region's nucleotide sequence