Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1720 and SMa1724 are separated by 568 nucleotides SMa1724 and SMa1725 are separated by 84 nucleotides
SMa1720: SMa1720 - LysR family transcriptional regulator, at 970,632 to 971,576
SMa1720
SMa1724: SMa1724 - Isochorismatase, at 972,145 to 972,690
SMa1724
SMa1725: SMa1725 - Transcriptional regulator, at 972,775 to 973,770
SMa1725
Position (kb) 972
973 Strain fitness (log2 ratio) -1
0
1 at 971.148 kb on + strand, within SMa1720 at 971.448 kb on - strand, within SMa1720 at 971.448 kb on - strand, within SMa1720 at 971.448 kb on - strand, within SMa1720 at 971.451 kb on + strand, within SMa1720 at 971.451 kb on + strand, within SMa1720 at 971.515 kb on - strand at 971.574 kb on + strand at 971.580 kb on + strand at 971.580 kb on + strand at 971.580 kb on + strand at 971.817 kb on + strand at 971.896 kb on - strand at 972.158 kb on + strand at 972.159 kb on - strand at 972.159 kb on - strand at 972.159 kb on - strand at 972.207 kb on + strand, within SMa1724 at 972.207 kb on + strand, within SMa1724 at 972.207 kb on + strand, within SMa1724 at 972.207 kb on + strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.208 kb on - strand, within SMa1724 at 972.209 kb on + strand, within SMa1724 at 972.209 kb on + strand, within SMa1724 at 972.209 kb on + strand, within SMa1724 at 972.209 kb on + strand, within SMa1724 at 972.210 kb on - strand, within SMa1724 at 972.210 kb on - strand, within SMa1724 at 972.210 kb on - strand, within SMa1724 at 972.210 kb on - strand, within SMa1724 at 972.432 kb on - strand, within SMa1724 at 972.543 kb on + strand, within SMa1724 at 972.647 kb on + strand at 972.695 kb on + strand at 972.696 kb on - strand at 972.709 kb on + strand at 972.709 kb on + strand at 972.709 kb on + strand at 972.709 kb on + strand at 972.742 kb on - strand at 972.775 kb on - strand at 972.817 kb on + strand at 972.843 kb on - strand at 972.920 kb on + strand, within SMa1725 at 972.990 kb on - strand, within SMa1725 at 972.990 kb on - strand, within SMa1725 at 972.990 kb on - strand, within SMa1725 at 973.008 kb on + strand, within SMa1725 at 973.008 kb on + strand, within SMa1725 at 973.009 kb on - strand, within SMa1725 at 973.060 kb on + strand, within SMa1725 at 973.060 kb on + strand, within SMa1725 at 973.061 kb on - strand, within SMa1725 at 973.063 kb on + strand, within SMa1725 at 973.064 kb on - strand, within SMa1725 at 973.064 kb on - strand, within SMa1725 at 973.186 kb on + strand, within SMa1725 at 973.186 kb on + strand, within SMa1725 at 973.307 kb on + strand, within SMa1725 at 973.394 kb on - strand, within SMa1725 at 973.396 kb on + strand, within SMa1725 at 973.397 kb on - strand, within SMa1725 at 973.563 kb on + strand, within SMa1725 at 973.576 kb on + strand, within SMa1725 at 973.577 kb on - strand, within SMa1725 at 973.600 kb on - strand, within SMa1725 at 973.614 kb on - strand, within SMa1725 at 973.614 kb on - strand, within SMa1725 at 973.663 kb on + strand, within SMa1725 at 973.664 kb on - strand, within SMa1725
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 971,148 + SMa1720 0.55 +0.2 971,448 - SMa1720 0.86 -0.7 971,448 - SMa1720 0.86 -0.1 971,448 - SMa1720 0.86 +0.2 971,451 + SMa1720 0.87 +0.0 971,451 + SMa1720 0.87 +0.1 971,515 - -0.8 971,574 + -0.1 971,580 + -1.3 971,580 + +0.6 971,580 + +0.0 971,817 + -0.0 971,896 - +0.1 972,158 + -1.1 972,159 - +0.4 972,159 - +0.1 972,159 - -0.4 972,207 + SMa1724 0.11 -0.7 972,207 + SMa1724 0.11 -0.2 972,207 + SMa1724 0.11 -0.3 972,207 + SMa1724 0.11 -1.1 972,208 - SMa1724 0.12 +0.1 972,208 - SMa1724 0.12 -0.5 972,208 - SMa1724 0.12 +0.4 972,208 - SMa1724 0.12 -0.2 972,208 - SMa1724 0.12 -0.2 972,208 - SMa1724 0.12 -0.3 972,208 - SMa1724 0.12 -0.8 972,209 + SMa1724 0.12 +0.3 972,209 + SMa1724 0.12 -0.5 972,209 + SMa1724 0.12 -0.3 972,209 + SMa1724 0.12 -0.9 972,210 - SMa1724 0.12 -0.8 972,210 - SMa1724 0.12 -0.3 972,210 - SMa1724 0.12 -0.1 972,210 - SMa1724 0.12 -0.7 972,432 - SMa1724 0.53 -1.0 972,543 + SMa1724 0.73 +0.4 972,647 + +0.2 972,695 + +1.6 972,696 - -0.4 972,709 + +0.3 972,709 + +0.2 972,709 + +0.2 972,709 + -0.5 972,742 - +0.1 972,775 - -0.6 972,817 + +0.2 972,843 - -0.1 972,920 + SMa1725 0.15 -0.5 972,990 - SMa1725 0.22 -0.3 972,990 - SMa1725 0.22 -0.6 972,990 - SMa1725 0.22 +0.7 973,008 + SMa1725 0.23 -1.4 973,008 + SMa1725 0.23 -0.4 973,009 - SMa1725 0.23 -0.0 973,060 + SMa1725 0.29 -0.4 973,060 + SMa1725 0.29 -1.1 973,061 - SMa1725 0.29 +0.0 973,063 + SMa1725 0.29 -0.7 973,064 - SMa1725 0.29 -0.3 973,064 - SMa1725 0.29 -0.0 973,186 + SMa1725 0.41 -1.4 973,186 + SMa1725 0.41 +0.5 973,307 + SMa1725 0.53 -0.0 973,394 - SMa1725 0.62 -0.2 973,396 + SMa1725 0.62 -0.5 973,397 - SMa1725 0.62 -0.4 973,563 + SMa1725 0.79 -0.1 973,576 + SMa1725 0.80 -0.5 973,577 - SMa1725 0.81 +0.5 973,600 - SMa1725 0.83 +1.2 973,614 - SMa1725 0.84 -0.3 973,614 - SMa1725 0.84 -0.5 973,663 + SMa1725 0.89 +0.2 973,664 - SMa1725 0.89 -0.8
Or see this region's nucleotide sequence