Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa5033 and SMa1696 are separated by 114 nucleotides SMa1696 and SMa1697 are separated by 281 nucleotides
SMa5033: SMa5033 - hypothetical protein, at 954,759 to 955,475
SMa5033
SMa1696: SMa1696 - Sensor histidine kinase, at 955,590 to 956,786
SMa1696
SMa1697: SMa1697 - hypothetical protein, at 957,068 to 957,667
SMa1697
Position (kb) 955
956
957 Strain fitness (log2 ratio) -2
-1
0
1
2 at 954.783 kb on - strand at 954.807 kb on - strand at 954.808 kb on + strand at 954.808 kb on + strand at 955.212 kb on + strand, within SMa5033 at 955.408 kb on + strand at 955.408 kb on + strand at 955.408 kb on + strand at 955.409 kb on - strand at 955.409 kb on - strand at 955.479 kb on - strand at 955.539 kb on + strand at 955.539 kb on + strand at 955.540 kb on - strand at 955.846 kb on + strand, within SMa1696 at 955.846 kb on + strand, within SMa1696 at 955.877 kb on + strand, within SMa1696 at 955.877 kb on + strand, within SMa1696 at 955.878 kb on - strand, within SMa1696 at 955.880 kb on + strand, within SMa1696 at 955.881 kb on - strand, within SMa1696 at 955.881 kb on - strand, within SMa1696 at 955.881 kb on - strand, within SMa1696 at 955.881 kb on - strand, within SMa1696 at 955.908 kb on - strand, within SMa1696 at 955.915 kb on + strand, within SMa1696 at 956.013 kb on + strand, within SMa1696 at 956.189 kb on + strand, within SMa1696 at 956.293 kb on + strand, within SMa1696 at 956.293 kb on + strand, within SMa1696 at 956.471 kb on - strand, within SMa1696 at 956.526 kb on - strand, within SMa1696 at 956.539 kb on - strand, within SMa1696 at 956.638 kb on + strand, within SMa1696 at 956.639 kb on - strand, within SMa1696 at 956.716 kb on + strand at 956.717 kb on - strand at 956.717 kb on - strand at 956.721 kb on + strand at 956.772 kb on - strand at 956.772 kb on - strand at 956.784 kb on + strand at 956.834 kb on + strand at 956.834 kb on + strand at 956.994 kb on - strand at 957.048 kb on - strand at 957.048 kb on - strand at 957.419 kb on + strand, within SMa1697 at 957.500 kb on + strand, within SMa1697 at 957.688 kb on - strand at 957.741 kb on - strand at 957.741 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 954,783 - +0.6 954,807 - -0.1 954,808 + -1.2 954,808 + -0.3 955,212 + SMa5033 0.63 -0.6 955,408 + -2.5 955,408 + -2.3 955,408 + -0.6 955,409 - -0.3 955,409 - +1.5 955,479 - +0.2 955,539 + -1.7 955,539 + -0.8 955,540 - -0.1 955,846 + SMa1696 0.21 -0.2 955,846 + SMa1696 0.21 +0.7 955,877 + SMa1696 0.24 -0.4 955,877 + SMa1696 0.24 +0.5 955,878 - SMa1696 0.24 +0.2 955,880 + SMa1696 0.24 +1.0 955,881 - SMa1696 0.24 +0.2 955,881 - SMa1696 0.24 +0.6 955,881 - SMa1696 0.24 -0.8 955,881 - SMa1696 0.24 +0.6 955,908 - SMa1696 0.27 +1.0 955,915 + SMa1696 0.27 +0.4 956,013 + SMa1696 0.35 +0.4 956,189 + SMa1696 0.50 -0.1 956,293 + SMa1696 0.59 +0.6 956,293 + SMa1696 0.59 +1.1 956,471 - SMa1696 0.74 -0.1 956,526 - SMa1696 0.78 +0.5 956,539 - SMa1696 0.79 +1.2 956,638 + SMa1696 0.88 +0.1 956,639 - SMa1696 0.88 +0.6 956,716 + -0.7 956,717 - +0.6 956,717 - +0.4 956,721 + +0.5 956,772 - +0.4 956,772 - -0.1 956,784 + +0.2 956,834 + +1.3 956,834 + +0.0 956,994 - +0.3 957,048 - -0.5 957,048 - +1.5 957,419 + SMa1697 0.58 -0.5 957,500 + SMa1697 0.72 -0.5 957,688 - -1.1 957,741 - +0.2 957,741 - +1.9
Or see this region's nucleotide sequence