Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1194 and SMa1195 are separated by 15 nucleotides SMa1195 and SMa1197 are separated by 175 nucleotides SMa1197 and SMa1198 are separated by 53 nucleotides
SMa1194: SMa1194 - NnrS dehydrogenase, at 656,365 to 657,546
SMa1194
SMa1195: SMa1195 - hypothetical protein, at 657,562 to 658,236
SMa1195
SMa1197: SMa1197 - hypothetical protein, at 658,412 to 658,774
SMa1197
SMa1198: SMa1198 - copper export protein, at 658,828 to 660,453
SMa1198
Position (kb) 657
658
659 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 656.691 kb on + strand, within SMa1194 at 656.691 kb on + strand, within SMa1194 at 656.692 kb on - strand, within SMa1194 at 656.750 kb on - strand, within SMa1194 at 656.751 kb on + strand, within SMa1194 at 656.751 kb on + strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.752 kb on - strand, within SMa1194 at 656.754 kb on + strand, within SMa1194 at 656.754 kb on + strand, within SMa1194 at 656.878 kb on - strand, within SMa1194 at 657.019 kb on + strand, within SMa1194 at 657.058 kb on + strand, within SMa1194 at 657.118 kb on - strand, within SMa1194 at 657.118 kb on - strand, within SMa1194 at 657.120 kb on - strand, within SMa1194 at 657.256 kb on - strand, within SMa1194 at 657.312 kb on + strand, within SMa1194 at 657.313 kb on - strand, within SMa1194 at 657.474 kb on + strand at 657.475 kb on - strand at 657.483 kb on + strand at 657.494 kb on - strand at 657.552 kb on - strand at 657.552 kb on - strand at 657.663 kb on + strand at 657.663 kb on + strand, within SMa1195 at 657.666 kb on - strand, within SMa1195 at 657.666 kb on - strand, within SMa1195 at 657.883 kb on + strand, within SMa1195 at 657.883 kb on + strand, within SMa1195 at 657.989 kb on + strand, within SMa1195 at 657.989 kb on + strand, within SMa1195 at 657.990 kb on - strand, within SMa1195 at 658.054 kb on + strand, within SMa1195 at 658.055 kb on - strand, within SMa1195 at 658.225 kb on + strand at 658.282 kb on + strand at 658.330 kb on + strand at 658.330 kb on + strand at 658.330 kb on + strand at 658.331 kb on - strand at 658.535 kb on + strand, within SMa1197 at 658.540 kb on + strand, within SMa1197 at 658.540 kb on + strand, within SMa1197 at 658.540 kb on + strand, within SMa1197 at 658.541 kb on - strand, within SMa1197 at 658.669 kb on + strand, within SMa1197 at 658.670 kb on - strand, within SMa1197 at 658.670 kb on - strand, within SMa1197 at 658.714 kb on + strand, within SMa1197 at 658.715 kb on - strand, within SMa1197 at 658.715 kb on - strand, within SMa1197 at 658.715 kb on - strand, within SMa1197 at 658.715 kb on - strand, within SMa1197 at 658.776 kb on + strand at 658.777 kb on - strand at 658.988 kb on - strand at 658.988 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 656,691 + SMa1194 0.28 -0.5 656,691 + SMa1194 0.28 +0.7 656,692 - SMa1194 0.28 +0.1 656,750 - SMa1194 0.33 -0.2 656,751 + SMa1194 0.33 +0.3 656,751 + SMa1194 0.33 +0.2 656,752 - SMa1194 0.33 +0.3 656,752 - SMa1194 0.33 +0.0 656,752 - SMa1194 0.33 +0.3 656,752 - SMa1194 0.33 +0.5 656,752 - SMa1194 0.33 -0.9 656,754 + SMa1194 0.33 +0.3 656,754 + SMa1194 0.33 +0.4 656,878 - SMa1194 0.43 +2.4 657,019 + SMa1194 0.55 +0.2 657,058 + SMa1194 0.59 +0.0 657,118 - SMa1194 0.64 -0.2 657,118 - SMa1194 0.64 -1.1 657,120 - SMa1194 0.64 -0.1 657,256 - SMa1194 0.75 +0.0 657,312 + SMa1194 0.80 +0.0 657,313 - SMa1194 0.80 +0.3 657,474 + +0.6 657,475 - +0.3 657,483 + +0.5 657,494 - +0.3 657,552 - +0.1 657,552 - +0.2 657,663 + -0.8 657,663 + SMa1195 0.15 +0.9 657,666 - SMa1195 0.15 +0.0 657,666 - SMa1195 0.15 +0.1 657,883 + SMa1195 0.48 +0.7 657,883 + SMa1195 0.48 +0.9 657,989 + SMa1195 0.63 +0.8 657,989 + SMa1195 0.63 -5.7 657,990 - SMa1195 0.63 -0.6 658,054 + SMa1195 0.73 +0.3 658,055 - SMa1195 0.73 +0.0 658,225 + +0.0 658,282 + +0.1 658,330 + +0.2 658,330 + -0.0 658,330 + -1.8 658,331 - -0.3 658,535 + SMa1197 0.34 +0.1 658,540 + SMa1197 0.35 +0.9 658,540 + SMa1197 0.35 +1.4 658,540 + SMa1197 0.35 +0.7 658,541 - SMa1197 0.36 -0.2 658,669 + SMa1197 0.71 -0.2 658,670 - SMa1197 0.71 +0.7 658,670 - SMa1197 0.71 -0.2 658,714 + SMa1197 0.83 -1.1 658,715 - SMa1197 0.83 +0.9 658,715 - SMa1197 0.83 -0.4 658,715 - SMa1197 0.83 -0.5 658,715 - SMa1197 0.83 -0.3 658,776 + +0.2 658,777 - +0.0 658,988 - +0.2 658,988 - +0.3
Or see this region's nucleotide sequence