Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1122 and SMa1124 are separated by 3 nucleotides SMa1124 and SMa1126 are separated by 19 nucleotides
SMa1122: SMa1122 - permease, at 610,188 to 612,551
SMa1122
SMa1124: SMa1124 - hypothetical protein, at 612,555 to 613,754
SMa1124
SMa1126: SMa1126 - Protease, at 613,774 to 614,892
SMa1126
Position (kb) 612
613
614 Strain fitness (log2 ratio) -1
0
1 at 611.629 kb on + strand, within SMa1122 at 611.893 kb on + strand, within SMa1122 at 611.947 kb on - strand, within SMa1122 at 611.947 kb on - strand, within SMa1122 at 612.210 kb on + strand, within SMa1122 at 612.217 kb on - strand, within SMa1122 at 612.253 kb on + strand, within SMa1122 at 612.254 kb on - strand, within SMa1122 at 612.378 kb on + strand at 612.378 kb on + strand at 612.442 kb on - strand at 612.549 kb on + strand at 612.549 kb on + strand at 612.550 kb on - strand at 612.625 kb on - strand at 612.625 kb on - strand at 612.767 kb on + strand, within SMa1124 at 613.038 kb on + strand, within SMa1124 at 613.082 kb on - strand, within SMa1124 at 613.740 kb on - strand at 613.869 kb on - strand at 614.146 kb on + strand, within SMa1126 at 614.255 kb on + strand, within SMa1126 at 614.290 kb on - strand, within SMa1126 at 614.290 kb on - strand, within SMa1126 at 614.291 kb on + strand, within SMa1126 at 614.291 kb on + strand, within SMa1126 at 614.292 kb on - strand, within SMa1126 at 614.292 kb on - strand, within SMa1126 at 614.292 kb on - strand, within SMa1126 at 614.292 kb on - strand, within SMa1126 at 614.429 kb on - strand, within SMa1126 at 614.704 kb on + strand, within SMa1126
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 611,629 + SMa1122 0.61 -0.4 611,893 + SMa1122 0.72 +0.9 611,947 - SMa1122 0.74 -0.5 611,947 - SMa1122 0.74 +0.3 612,210 + SMa1122 0.86 +0.6 612,217 - SMa1122 0.86 +0.0 612,253 + SMa1122 0.87 -0.1 612,254 - SMa1122 0.87 -0.1 612,378 + -0.1 612,378 + -0.1 612,442 - +0.7 612,549 + +0.0 612,549 + +0.2 612,550 - -0.6 612,625 - -0.2 612,625 - +0.7 612,767 + SMa1124 0.18 +0.7 613,038 + SMa1124 0.40 +1.2 613,082 - SMa1124 0.44 -0.7 613,740 - -0.6 613,869 - +0.3 614,146 + SMa1126 0.33 +0.1 614,255 + SMa1126 0.43 +0.0 614,290 - SMa1126 0.46 +0.8 614,290 - SMa1126 0.46 +0.1 614,291 + SMa1126 0.46 +0.6 614,291 + SMa1126 0.46 +0.1 614,292 - SMa1126 0.46 +0.7 614,292 - SMa1126 0.46 +1.7 614,292 - SMa1126 0.46 -0.5 614,292 - SMa1126 0.46 +0.7 614,429 - SMa1126 0.59 +0.5 614,704 + SMa1126 0.83 +0.8
Or see this region's nucleotide sequence