Strain Fitness in Sinorhizobium meliloti 1021 around SMa0260

Experiment: pipercolic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMa0259 and SMa0260 are separated by 15 nucleotidesSMa0260 and SMa0263 are separated by 16 nucleotides SMa0259: SMa0259 - hypothetical protein, at 145,822 to 146,667 SMa0259 SMa0260: SMa0260 - GabD3 succinate-semialdehyde dehdyrogenase, at 146,683 to 148,146 SMa0260 SMa0263: SMa0263 - alcohol dehydrogenase, at 148,163 to 149,362 SMa0263 Position (kb) 146 147 148 149Strain fitness (log2 ratio) -2 -1 0 1 2 3at 145.686 kb on + strandat 145.867 kb on + strandat 145.970 kb on - strand, within SMa0259at 145.971 kb on - strand, within SMa0259at 146.015 kb on + strand, within SMa0259at 146.015 kb on + strand, within SMa0259at 146.016 kb on - strand, within SMa0259at 146.055 kb on + strand, within SMa0259at 146.426 kb on + strand, within SMa0259at 146.427 kb on - strand, within SMa0259at 146.427 kb on - strand, within SMa0259at 146.453 kb on + strand, within SMa0259at 146.548 kb on + strand, within SMa0259at 146.548 kb on + strand, within SMa0259at 146.549 kb on - strand, within SMa0259at 146.688 kb on - strandat 146.702 kb on + strandat 146.876 kb on + strand, within SMa0260at 146.876 kb on + strand, within SMa0260at 146.882 kb on + strand, within SMa0260at 146.897 kb on + strand, within SMa0260at 146.897 kb on + strand, within SMa0260at 146.897 kb on + strand, within SMa0260at 146.905 kb on - strand, within SMa0260at 146.999 kb on - strand, within SMa0260at 147.035 kb on + strand, within SMa0260at 147.036 kb on - strand, within SMa0260at 147.245 kb on + strand, within SMa0260at 147.245 kb on + strand, within SMa0260at 147.409 kb on + strand, within SMa0260at 147.410 kb on - strand, within SMa0260at 147.484 kb on + strand, within SMa0260at 147.566 kb on + strand, within SMa0260at 147.567 kb on - strand, within SMa0260at 147.567 kb on - strand, within SMa0260at 147.567 kb on - strand, within SMa0260at 147.567 kb on - strand, within SMa0260at 147.718 kb on - strand, within SMa0260at 147.804 kb on - strand, within SMa0260at 147.853 kb on + strand, within SMa0260at 148.027 kb on - strandat 148.051 kb on + strandat 148.085 kb on + strandat 148.086 kb on - strandat 148.253 kb on + strandat 148.458 kb on + strand, within SMa0263at 148.459 kb on - strand, within SMa0263at 148.467 kb on - strand, within SMa0263at 148.892 kb on - strand, within SMa0263at 148.993 kb on - strand, within SMa0263at 149.001 kb on + strand, within SMa0263at 149.004 kb on + strand, within SMa0263at 149.004 kb on + strand, within SMa0263at 149.005 kb on - strand, within SMa0263

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Per-strain Table

Position Strand Gene LocusTag Fraction pipercolic (C)
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145,686 + +1.0
145,867 + -0.8
145,970 - SMa0259 0.17 -0.3
145,971 - SMa0259 0.18 +0.6
146,015 + SMa0259 0.23 -0.0
146,015 + SMa0259 0.23 -0.1
146,016 - SMa0259 0.23 +3.6
146,055 + SMa0259 0.28 -2.0
146,426 + SMa0259 0.71 -0.4
146,427 - SMa0259 0.72 +0.6
146,427 - SMa0259 0.72 -0.2
146,453 + SMa0259 0.75 -0.0
146,548 + SMa0259 0.86 -0.3
146,548 + SMa0259 0.86 -0.0
146,549 - SMa0259 0.86 -0.6
146,688 - +0.1
146,702 + -0.5
146,876 + SMa0260 0.13 +1.6
146,876 + SMa0260 0.13 -0.0
146,882 + SMa0260 0.14 -0.2
146,897 + SMa0260 0.15 -0.7
146,897 + SMa0260 0.15 -0.9
146,897 + SMa0260 0.15 -0.1
146,905 - SMa0260 0.15 -0.8
146,999 - SMa0260 0.22 -0.1
147,035 + SMa0260 0.24 -0.4
147,036 - SMa0260 0.24 +0.2
147,245 + SMa0260 0.38 +0.1
147,245 + SMa0260 0.38 -0.4
147,409 + SMa0260 0.50 +0.2
147,410 - SMa0260 0.50 -0.2
147,484 + SMa0260 0.55 -0.1
147,566 + SMa0260 0.60 +0.6
147,567 - SMa0260 0.60 +0.8
147,567 - SMa0260 0.60 +0.3
147,567 - SMa0260 0.60 +0.0
147,567 - SMa0260 0.60 -0.0
147,718 - SMa0260 0.71 -0.4
147,804 - SMa0260 0.77 +0.5
147,853 + SMa0260 0.80 -0.3
148,027 - +1.2
148,051 + -0.4
148,085 + -0.3
148,086 - +2.3
148,253 + -1.1
148,458 + SMa0263 0.25 +1.6
148,459 - SMa0263 0.25 +0.4
148,467 - SMa0263 0.25 -1.8
148,892 - SMa0263 0.61 +0.7
148,993 - SMa0263 0.69 +0.0
149,001 + SMa0263 0.70 +0.2
149,004 + SMa0263 0.70 +0.1
149,004 + SMa0263 0.70 +0.1
149,005 - SMa0263 0.70 +0.4

Or see this region's nucleotide sequence