Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0041 and SMa0044 are separated by 28 nucleotides SMa0044 and SMa0045 are separated by 164 nucleotides SMa0045 and SMa5015 are separated by 308 nucleotides SMa5015 and SMa0050 are separated by 140 nucleotides SMa0050 and SMa0052 overlap by 10 nucleotides
SMa0041: SMa0041 - quinone oxidoreductase, at 24,399 to 25,388
SMa0041
SMa0044: SMa0044 - hypothetical protein, at 25,417 to 25,683
SMa0044
SMa0045: SMa0045 - carbonic anhydrase, at 25,848 to 26,597
SMa0045
SMa5015: SMa5015 - hypothetical protein, at 26,906 to 27,154
SMa5015
SMa0050: SMa0050 - hypothetical protein, at 27,295 to 27,516
SMa0050
SMa0052: SMa0052 - hypothetical protein, at 27,507 to 27,713
SMa0052
Position (kb) 25
26
27 Strain fitness (log2 ratio) -2
-1
0
1 at 24.913 kb on + strand, within SMa0041 at 25.064 kb on - strand, within SMa0041 at 25.114 kb on + strand, within SMa0041 at 25.115 kb on - strand, within SMa0041 at 25.200 kb on + strand, within SMa0041 at 25.204 kb on + strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.205 kb on - strand, within SMa0041 at 25.669 kb on + strand at 25.670 kb on - strand at 25.745 kb on - strand at 25.812 kb on + strand at 25.824 kb on + strand at 25.824 kb on + strand at 25.825 kb on - strand at 25.825 kb on - strand at 25.825 kb on - strand at 25.860 kb on + strand at 25.861 kb on - strand at 25.861 kb on - strand at 25.867 kb on + strand at 25.909 kb on + strand at 26.017 kb on + strand, within SMa0045 at 26.017 kb on + strand, within SMa0045 at 26.017 kb on + strand, within SMa0045 at 26.018 kb on - strand, within SMa0045 at 26.018 kb on - strand, within SMa0045 at 26.026 kb on + strand, within SMa0045 at 26.026 kb on + strand, within SMa0045 at 26.030 kb on + strand, within SMa0045 at 26.030 kb on + strand, within SMa0045 at 26.030 kb on + strand, within SMa0045 at 26.031 kb on - strand, within SMa0045 at 26.031 kb on - strand, within SMa0045 at 26.031 kb on - strand, within SMa0045 at 26.031 kb on - strand, within SMa0045 at 26.031 kb on - strand, within SMa0045 at 26.031 kb on - strand, within SMa0045 at 26.263 kb on + strand, within SMa0045 at 26.264 kb on - strand, within SMa0045 at 26.264 kb on - strand, within SMa0045 at 26.330 kb on + strand, within SMa0045 at 26.331 kb on - strand, within SMa0045 at 26.463 kb on + strand, within SMa0045 at 26.463 kb on + strand, within SMa0045 at 26.463 kb on + strand, within SMa0045 at 26.501 kb on - strand, within SMa0045 at 26.501 kb on - strand, within SMa0045 at 26.601 kb on + strand at 26.657 kb on + strand at 26.657 kb on + strand at 26.657 kb on + strand at 26.658 kb on - strand at 26.658 kb on - strand at 26.658 kb on - strand at 26.705 kb on + strand at 26.706 kb on - strand at 26.730 kb on + strand at 26.902 kb on + strand at 26.966 kb on - strand, within SMa5015 at 27.119 kb on + strand, within SMa5015 at 27.251 kb on - strand at 27.310 kb on + strand at 27.435 kb on + strand, within SMa0050 at 27.435 kb on + strand, within SMa0050 at 27.435 kb on + strand, within SMa0050 at 27.436 kb on - strand, within SMa0050
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 24,913 + SMa0041 0.52 -1.0 25,064 - SMa0041 0.67 +0.1 25,114 + SMa0041 0.72 +0.5 25,115 - SMa0041 0.72 -1.0 25,200 + SMa0041 0.81 -0.8 25,204 + SMa0041 0.81 -0.0 25,205 - SMa0041 0.81 -0.4 25,205 - SMa0041 0.81 -0.0 25,205 - SMa0041 0.81 -0.2 25,205 - SMa0041 0.81 -0.3 25,205 - SMa0041 0.81 +0.0 25,669 + +0.3 25,670 - -0.5 25,745 - +0.1 25,812 + +0.4 25,824 + -0.3 25,824 + +0.2 25,825 - -0.4 25,825 - -0.2 25,825 - +0.6 25,860 + -0.2 25,861 - -0.1 25,861 - -0.4 25,867 + -0.4 25,909 + -1.4 26,017 + SMa0045 0.23 -0.4 26,017 + SMa0045 0.23 -0.3 26,017 + SMa0045 0.23 +0.6 26,018 - SMa0045 0.23 +0.1 26,018 - SMa0045 0.23 -0.3 26,026 + SMa0045 0.24 -0.5 26,026 + SMa0045 0.24 +1.0 26,030 + SMa0045 0.24 -0.1 26,030 + SMa0045 0.24 +0.8 26,030 + SMa0045 0.24 +0.8 26,031 - SMa0045 0.24 +0.4 26,031 - SMa0045 0.24 -0.4 26,031 - SMa0045 0.24 -0.1 26,031 - SMa0045 0.24 -0.9 26,031 - SMa0045 0.24 -0.0 26,031 - SMa0045 0.24 +0.1 26,263 + SMa0045 0.55 +0.1 26,264 - SMa0045 0.55 +0.1 26,264 - SMa0045 0.55 -0.4 26,330 + SMa0045 0.64 -0.3 26,331 - SMa0045 0.64 +1.0 26,463 + SMa0045 0.82 +0.4 26,463 + SMa0045 0.82 -0.7 26,463 + SMa0045 0.82 -0.0 26,501 - SMa0045 0.87 -0.1 26,501 - SMa0045 0.87 -0.0 26,601 + +0.9 26,657 + -0.5 26,657 + +0.4 26,657 + +0.1 26,658 - +0.5 26,658 - +0.3 26,658 - +0.8 26,705 + +0.1 26,706 - -0.8 26,730 + -2.1 26,902 + -0.2 26,966 - SMa5015 0.24 -0.7 27,119 + SMa5015 0.86 -0.2 27,251 - -1.4 27,310 + -0.8 27,435 + SMa0050 0.63 -2.3 27,435 + SMa0050 0.63 -0.4 27,435 + SMa0050 0.63 -2.7 27,436 - SMa0050 0.64 -0.0
Or see this region's nucleotide sequence