Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b21308 and SM_b21309 overlap by 4 nucleotides SM_b21309 and SM_b21310 are separated by 8 nucleotides SM_b21310 and SM_b21311 are separated by 11 nucleotides
SM_b21308: SM_b21308 - glycosyltransferase, forming alpha glycosyl linkages protein, at 970,842 to 972,164
_b21308
SM_b21309: SM_b21309 - hypothetical protein, at 972,161 to 974,377
_b21309
SM_b21310: SM_b21310 - hypothetical protein, at 974,386 to 975,090
_b21310
SM_b21311: SM_b21311 - glycosyltransferase, at 975,102 to 976,364
_b21311
Position (kb) 972
973
974
975 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 971.434 kb on + strand, within SM_b21308 at 971.478 kb on + strand, within SM_b21308 at 971.479 kb on - strand, within SM_b21308 at 971.540 kb on + strand, within SM_b21308 at 971.755 kb on + strand, within SM_b21308 at 971.755 kb on + strand, within SM_b21308 at 971.809 kb on + strand, within SM_b21308 at 972.037 kb on + strand at 972.037 kb on + strand at 972.038 kb on - strand at 972.038 kb on - strand at 972.040 kb on - strand at 972.040 kb on - strand at 972.074 kb on + strand at 972.075 kb on - strand at 972.093 kb on + strand at 972.391 kb on - strand, within SM_b21309 at 972.514 kb on - strand, within SM_b21309 at 972.586 kb on - strand, within SM_b21309 at 972.645 kb on + strand, within SM_b21309 at 972.735 kb on + strand, within SM_b21309 at 972.736 kb on - strand, within SM_b21309 at 972.736 kb on - strand, within SM_b21309 at 973.178 kb on + strand, within SM_b21309 at 973.178 kb on + strand, within SM_b21309 at 973.435 kb on + strand, within SM_b21309 at 973.436 kb on - strand, within SM_b21309 at 973.436 kb on - strand, within SM_b21309 at 973.568 kb on - strand, within SM_b21309 at 974.074 kb on + strand, within SM_b21309 at 974.074 kb on + strand, within SM_b21309 at 974.145 kb on + strand, within SM_b21309 at 974.284 kb on + strand at 974.285 kb on - strand at 974.380 kb on + strand at 974.380 kb on + strand at 974.380 kb on + strand at 974.380 kb on + strand at 974.381 kb on - strand at 974.625 kb on + strand, within SM_b21310 at 974.626 kb on - strand, within SM_b21310 at 974.858 kb on + strand, within SM_b21310 at 974.859 kb on - strand, within SM_b21310 at 974.859 kb on - strand, within SM_b21310 at 974.943 kb on - strand, within SM_b21310 at 975.045 kb on + strand at 975.045 kb on + strand at 975.045 kb on + strand at 975.046 kb on - strand at 975.046 kb on - strand at 975.104 kb on - strand at 975.152 kb on - strand at 975.337 kb on - strand, within SM_b21311
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 971,434 + SM_b21308 0.45 -0.2 971,478 + SM_b21308 0.48 -0.6 971,479 - SM_b21308 0.48 -0.7 971,540 + SM_b21308 0.53 -0.5 971,755 + SM_b21308 0.69 -0.3 971,755 + SM_b21308 0.69 -0.1 971,809 + SM_b21308 0.73 -0.1 972,037 + -0.2 972,037 + +0.0 972,038 - -0.5 972,038 - +0.0 972,040 - -0.4 972,040 - -0.7 972,074 + -0.6 972,075 - -0.1 972,093 + +1.5 972,391 - SM_b21309 0.10 -0.2 972,514 - SM_b21309 0.16 +0.1 972,586 - SM_b21309 0.19 +0.6 972,645 + SM_b21309 0.22 -0.0 972,735 + SM_b21309 0.26 -1.9 972,736 - SM_b21309 0.26 -1.3 972,736 - SM_b21309 0.26 -0.7 973,178 + SM_b21309 0.46 -0.6 973,178 + SM_b21309 0.46 +0.2 973,435 + SM_b21309 0.57 -2.5 973,436 - SM_b21309 0.58 -4.7 973,436 - SM_b21309 0.58 +2.6 973,568 - SM_b21309 0.63 +0.5 974,074 + SM_b21309 0.86 +0.2 974,074 + SM_b21309 0.86 -0.2 974,145 + SM_b21309 0.89 -0.3 974,284 + -0.9 974,285 - +0.2 974,380 + +0.6 974,380 + +1.2 974,380 + +0.1 974,380 + -0.4 974,381 - -0.2 974,625 + SM_b21310 0.34 -1.0 974,626 - SM_b21310 0.34 -0.8 974,858 + SM_b21310 0.67 +1.2 974,859 - SM_b21310 0.67 -0.0 974,859 - SM_b21310 0.67 +0.3 974,943 - SM_b21310 0.79 -1.4 975,045 + -0.5 975,045 + -1.9 975,045 + -1.1 975,046 - -1.0 975,046 - +0.1 975,104 - -0.4 975,152 - -0.5 975,337 - SM_b21311 0.19 +0.4
Or see this region's nucleotide sequence