Strain Fitness in Sinorhizobium meliloti 1021 around SM_b21288

Experiment: pipercolic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b21287 and SM_b21288 are separated by 26 nucleotidesSM_b21288 and SM_b21289 overlap by 11 nucleotidesSM_b21289 and SM_b21290 overlap by 11 nucleotides SM_b21287: SM_b21287 - xanthine dehydrogenase, at 862,359 to 864,692 _b21287 SM_b21288: SM_b21288 - xanthine dehydrogenase, at 864,719 to 865,585 _b21288 SM_b21289: SM_b21289 - protein, may interact with ubiquitin, at 865,575 to 866,078 _b21289 SM_b21290: SM_b21290 - NADPH quinone oxidoreductase, at 866,068 to 867,048 _b21290 Position (kb) 864 865 866Strain fitness (log2 ratio) -1 0 1 2at 863.763 kb on + strand, within SM_b21287at 863.764 kb on - strand, within SM_b21287at 863.764 kb on - strand, within SM_b21287at 863.765 kb on + strand, within SM_b21287at 863.821 kb on - strand, within SM_b21287at 863.860 kb on + strand, within SM_b21287at 863.860 kb on + strand, within SM_b21287at 863.860 kb on + strand, within SM_b21287at 863.873 kb on + strand, within SM_b21287at 863.875 kb on + strand, within SM_b21287at 863.875 kb on + strand, within SM_b21287at 863.875 kb on + strand, within SM_b21287at 863.875 kb on + strand, within SM_b21287at 863.875 kb on + strand, within SM_b21287at 863.876 kb on - strand, within SM_b21287at 863.876 kb on - strand, within SM_b21287at 863.876 kb on - strand, within SM_b21287at 863.876 kb on - strand, within SM_b21287at 863.876 kb on - strand, within SM_b21287at 864.098 kb on + strand, within SM_b21287at 864.098 kb on + strand, within SM_b21287at 864.098 kb on + strand, within SM_b21287at 864.099 kb on - strand, within SM_b21287at 864.111 kb on + strand, within SM_b21287at 864.112 kb on - strand, within SM_b21287at 864.148 kb on - strand, within SM_b21287at 864.201 kb on + strand, within SM_b21287at 864.201 kb on + strand, within SM_b21287at 864.204 kb on + strand, within SM_b21287at 864.205 kb on - strand, within SM_b21287at 864.262 kb on - strand, within SM_b21287at 864.262 kb on - strand, within SM_b21287at 864.282 kb on - strand, within SM_b21287at 864.429 kb on + strand, within SM_b21287at 864.429 kb on + strand, within SM_b21287at 864.429 kb on + strand, within SM_b21287at 864.429 kb on + strand, within SM_b21287at 864.430 kb on - strand, within SM_b21287at 864.608 kb on + strandat 864.747 kb on + strandat 864.748 kb on - strandat 865.085 kb on + strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.086 kb on - strand, within SM_b21288at 865.344 kb on - strand, within SM_b21288at 865.357 kb on - strand, within SM_b21288at 865.357 kb on - strand, within SM_b21288at 865.357 kb on - strand, within SM_b21288at 865.510 kb on - strandat 865.583 kb on + strandat 865.583 kb on + strandat 865.583 kb on + strandat 865.744 kb on - strand, within SM_b21289at 865.767 kb on + strand, within SM_b21289at 865.767 kb on + strand, within SM_b21289at 865.880 kb on - strand, within SM_b21289at 865.953 kb on + strand, within SM_b21289at 865.953 kb on + strand, within SM_b21289at 865.954 kb on - strand, within SM_b21289at 865.985 kb on + strand, within SM_b21289at 865.986 kb on - strand, within SM_b21289at 865.993 kb on + strand, within SM_b21289at 866.005 kb on - strand, within SM_b21289at 866.005 kb on - strand, within SM_b21289at 866.005 kb on - strand, within SM_b21289at 866.023 kb on - strand, within SM_b21289at 866.023 kb on - strand, within SM_b21289at 866.067 kb on + strandat 866.067 kb on + strandat 866.068 kb on - strandat 866.130 kb on + strandat 866.189 kb on - strand, within SM_b21290at 866.189 kb on - strand, within SM_b21290at 866.277 kb on - strand, within SM_b21290at 866.363 kb on - strand, within SM_b21290at 866.371 kb on + strand, within SM_b21290at 866.372 kb on - strand, within SM_b21290at 866.375 kb on + strand, within SM_b21290at 866.375 kb on + strand, within SM_b21290at 866.376 kb on - strand, within SM_b21290at 866.399 kb on + strand, within SM_b21290

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Per-strain Table

Position Strand Gene LocusTag Fraction pipercolic (C)
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863,763 + SM_b21287 0.60 +1.0
863,764 - SM_b21287 0.60 +0.2
863,764 - SM_b21287 0.60 -1.2
863,765 + SM_b21287 0.60 -0.2
863,821 - SM_b21287 0.63 +0.1
863,860 + SM_b21287 0.64 -0.2
863,860 + SM_b21287 0.64 -0.4
863,860 + SM_b21287 0.64 +0.2
863,873 + SM_b21287 0.65 +0.4
863,875 + SM_b21287 0.65 +0.6
863,875 + SM_b21287 0.65 -0.3
863,875 + SM_b21287 0.65 -0.2
863,875 + SM_b21287 0.65 -1.1
863,875 + SM_b21287 0.65 +0.5
863,876 - SM_b21287 0.65 +2.4
863,876 - SM_b21287 0.65 -0.1
863,876 - SM_b21287 0.65 -0.5
863,876 - SM_b21287 0.65 -0.5
863,876 - SM_b21287 0.65 +0.2
864,098 + SM_b21287 0.75 -0.2
864,098 + SM_b21287 0.75 +0.1
864,098 + SM_b21287 0.75 +0.2
864,099 - SM_b21287 0.75 +0.5
864,111 + SM_b21287 0.75 -0.3
864,112 - SM_b21287 0.75 -0.0
864,148 - SM_b21287 0.77 +0.6
864,201 + SM_b21287 0.79 -0.3
864,201 + SM_b21287 0.79 -0.2
864,204 + SM_b21287 0.79 -1.4
864,205 - SM_b21287 0.79 -1.4
864,262 - SM_b21287 0.82 -0.3
864,262 - SM_b21287 0.82 +0.3
864,282 - SM_b21287 0.82 -0.2
864,429 + SM_b21287 0.89 -0.4
864,429 + SM_b21287 0.89 +1.0
864,429 + SM_b21287 0.89 -0.5
864,429 + SM_b21287 0.89 -0.3
864,430 - SM_b21287 0.89 +1.7
864,608 + -0.7
864,747 + -1.0
864,748 - +0.8
865,085 + SM_b21288 0.42 +0.6
865,086 - SM_b21288 0.42 -0.2
865,086 - SM_b21288 0.42 +0.3
865,086 - SM_b21288 0.42 +0.1
865,086 - SM_b21288 0.42 +0.3
865,086 - SM_b21288 0.42 -0.2
865,344 - SM_b21288 0.72 -0.2
865,357 - SM_b21288 0.74 +0.6
865,357 - SM_b21288 0.74 +0.3
865,357 - SM_b21288 0.74 +1.1
865,510 - -0.5
865,583 + +0.2
865,583 + +0.1
865,583 + -0.3
865,744 - SM_b21289 0.34 +0.1
865,767 + SM_b21289 0.38 +1.5
865,767 + SM_b21289 0.38 +0.3
865,880 - SM_b21289 0.61 +0.1
865,953 + SM_b21289 0.75 -0.3
865,953 + SM_b21289 0.75 -0.3
865,954 - SM_b21289 0.75 +1.0
865,985 + SM_b21289 0.81 -0.1
865,986 - SM_b21289 0.82 +0.5
865,993 + SM_b21289 0.83 +1.0
866,005 - SM_b21289 0.85 -0.0
866,005 - SM_b21289 0.85 -0.4
866,005 - SM_b21289 0.85 -0.5
866,023 - SM_b21289 0.89 +0.3
866,023 - SM_b21289 0.89 -0.1
866,067 + -1.1
866,067 + +0.3
866,068 - -1.5
866,130 + +0.2
866,189 - SM_b21290 0.12 -0.3
866,189 - SM_b21290 0.12 +0.2
866,277 - SM_b21290 0.21 +0.1
866,363 - SM_b21290 0.30 +0.8
866,371 + SM_b21290 0.31 -0.9
866,372 - SM_b21290 0.31 -0.5
866,375 + SM_b21290 0.31 -0.5
866,375 + SM_b21290 0.31 +0.3
866,376 - SM_b21290 0.31 -0.1
866,399 + SM_b21290 0.34 +0.2

Or see this region's nucleotide sequence