Strain Fitness in Sinorhizobium meliloti 1021 around SM_b20850

Experiment: pipercolic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSM_b20849 and SM_b20850 are separated by 114 nucleotidesSM_b20850 and SM_b20851 are separated by 247 nucleotides SM_b20849: SM_b20849 - guanine deaminase, at 1,251,749 to 1,253,065 _b20849 SM_b20850: SM_b20850 - L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) (from data), at 1,253,180 to 1,254,316 _b20850 SM_b20851: SM_b20851 - SorC family transcriptional regulator, at 1,254,564 to 1,255,544 _b20851 Position (kb) 1253 1254 1255Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1252.286 kb on + strand, within SM_b20849at 1252.286 kb on + strand, within SM_b20849at 1252.287 kb on - strand, within SM_b20849at 1252.346 kb on - strand, within SM_b20849at 1252.504 kb on + strand, within SM_b20849at 1252.505 kb on - strand, within SM_b20849at 1252.514 kb on + strand, within SM_b20849at 1252.736 kb on + strand, within SM_b20849at 1252.737 kb on - strand, within SM_b20849at 1252.767 kb on - strand, within SM_b20849at 1252.817 kb on + strand, within SM_b20849at 1252.817 kb on + strand, within SM_b20849at 1252.848 kb on + strand, within SM_b20849at 1253.118 kb on - strandat 1253.120 kb on + strandat 1253.121 kb on - strandat 1253.142 kb on + strandat 1253.199 kb on + strandat 1253.200 kb on - strandat 1253.253 kb on - strandat 1253.285 kb on + strandat 1253.286 kb on - strandat 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.567 kb on + strand, within SM_b20850at 1253.568 kb on - strand, within SM_b20850at 1253.568 kb on - strand, within SM_b20850at 1253.568 kb on - strand, within SM_b20850at 1253.678 kb on - strand, within SM_b20850at 1254.130 kb on + strand, within SM_b20850at 1254.131 kb on - strand, within SM_b20850at 1254.131 kb on - strand, within SM_b20850at 1254.161 kb on + strand, within SM_b20850at 1254.161 kb on + strand, within SM_b20850at 1254.162 kb on - strand, within SM_b20850at 1254.162 kb on - strand, within SM_b20850at 1254.162 kb on - strand, within SM_b20850at 1254.314 kb on + strandat 1254.359 kb on - strandat 1254.359 kb on - strandat 1254.405 kb on + strandat 1254.405 kb on + strandat 1254.420 kb on + strandat 1254.420 kb on + strandat 1254.420 kb on + strandat 1254.421 kb on - strandat 1254.421 kb on - strandat 1255.049 kb on + strand, within SM_b20851at 1255.049 kb on + strand, within SM_b20851at 1255.049 kb on + strand, within SM_b20851at 1255.049 kb on + strand, within SM_b20851at 1255.050 kb on - strandat 1255.050 kb on - strand, within SM_b20851at 1255.054 kb on + strand, within SM_b20851at 1255.055 kb on - strand, within SM_b20851at 1255.096 kb on - strand, within SM_b20851at 1255.154 kb on + strand, within SM_b20851at 1255.154 kb on + strand, within SM_b20851at 1255.155 kb on - strand, within SM_b20851at 1255.207 kb on + strand, within SM_b20851at 1255.207 kb on + strand, within SM_b20851at 1255.208 kb on - strand, within SM_b20851at 1255.208 kb on - strand, within SM_b20851

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Per-strain Table

Position Strand Gene LocusTag Fraction pipercolic (C)
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1,252,286 + SM_b20849 0.41 -0.6
1,252,286 + SM_b20849 0.41 -0.4
1,252,287 - SM_b20849 0.41 +0.0
1,252,346 - SM_b20849 0.45 -0.5
1,252,504 + SM_b20849 0.57 +0.7
1,252,505 - SM_b20849 0.57 +0.1
1,252,514 + SM_b20849 0.58 +1.6
1,252,736 + SM_b20849 0.75 +0.5
1,252,737 - SM_b20849 0.75 +0.7
1,252,767 - SM_b20849 0.77 +0.3
1,252,817 + SM_b20849 0.81 +0.4
1,252,817 + SM_b20849 0.81 +0.7
1,252,848 + SM_b20849 0.83 -0.7
1,253,118 - +0.2
1,253,120 + +0.3
1,253,121 - +0.3
1,253,142 + +0.8
1,253,199 + -1.5
1,253,200 - +0.1
1,253,253 - +0.5
1,253,285 + -1.3
1,253,286 - -0.4
1,253,567 + SM_b20850 0.34 +0.3
1,253,567 + SM_b20850 0.34 +0.2
1,253,567 + SM_b20850 0.34 +3.8
1,253,567 + SM_b20850 0.34 -0.9
1,253,567 + SM_b20850 0.34 -0.6
1,253,567 + SM_b20850 0.34 -0.3
1,253,568 - SM_b20850 0.34 +1.1
1,253,568 - SM_b20850 0.34 +0.7
1,253,568 - SM_b20850 0.34 +0.3
1,253,678 - SM_b20850 0.44 +0.2
1,254,130 + SM_b20850 0.84 +0.5
1,254,131 - SM_b20850 0.84 +0.8
1,254,131 - SM_b20850 0.84 -2.1
1,254,161 + SM_b20850 0.86 -0.1
1,254,161 + SM_b20850 0.86 -0.2
1,254,162 - SM_b20850 0.86 +0.3
1,254,162 - SM_b20850 0.86 -0.3
1,254,162 - SM_b20850 0.86 +0.9
1,254,314 + -0.0
1,254,359 - -0.1
1,254,359 - -0.9
1,254,405 + +1.3
1,254,405 + -0.1
1,254,420 + +1.6
1,254,420 + -0.6
1,254,420 + +0.3
1,254,421 - +0.6
1,254,421 - +0.0
1,255,049 + SM_b20851 0.49 -0.4
1,255,049 + SM_b20851 0.49 +0.1
1,255,049 + SM_b20851 0.49 +0.5
1,255,049 + SM_b20851 0.49 +1.0
1,255,050 - +0.3
1,255,050 - SM_b20851 0.50 -0.1
1,255,054 + SM_b20851 0.50 -0.3
1,255,055 - SM_b20851 0.50 +0.7
1,255,096 - SM_b20851 0.54 +0.1
1,255,154 + SM_b20851 0.60 +0.4
1,255,154 + SM_b20851 0.60 +0.0
1,255,155 - SM_b20851 0.60 -0.3
1,255,207 + SM_b20851 0.66 +0.6
1,255,207 + SM_b20851 0.66 +1.8
1,255,208 - SM_b20851 0.66 +0.2
1,255,208 - SM_b20851 0.66 -0.5

Or see this region's nucleotide sequence