Experiment: pipercolic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20600 and SM_b21707 are separated by 171 nucleotides SM_b21707 and SM_b20602 are separated by 18 nucleotides SM_b20602 and SM_b20603 are separated by 5 nucleotides
SM_b20600: SM_b20600 - hypothetical protein, at 1,613,880 to 1,614,503
_b20600
SM_b21707: SM_b21707 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,614,675 to 1,615,370
_b21707
SM_b20602: SM_b20602 - branched-chain amino acid ABC transporter ATP-binding protein, at 1,615,389 to 1,616,141
_b20602
SM_b20603: SM_b20603 - branched-chain amino acid ABC transporter permease, at 1,616,147 to 1,617,322
_b20603
Position (kb)
1615
1616
1617 Strain fitness (log2 ratio)
-2
-1
0
1 at 1614.450 kb on + strand at 1614.685 kb on - strand at 1614.759 kb on - strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.760 kb on + strand, within SM_b21707 at 1614.761 kb on - strand, within SM_b21707 at 1614.797 kb on - strand, within SM_b21707 at 1614.797 kb on - strand, within SM_b21707 at 1614.797 kb on - strand, within SM_b21707 at 1614.842 kb on - strand, within SM_b21707 at 1615.026 kb on + strand, within SM_b21707 at 1615.026 kb on + strand, within SM_b21707 at 1615.026 kb on + strand, within SM_b21707 at 1615.026 kb on + strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.027 kb on - strand, within SM_b21707 at 1615.028 kb on + strand, within SM_b21707 at 1615.028 kb on + strand, within SM_b21707 at 1615.029 kb on - strand, within SM_b21707 at 1615.029 kb on - strand, within SM_b21707 at 1615.132 kb on + strand, within SM_b21707 at 1615.340 kb on - strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.402 kb on + strand at 1615.403 kb on - strand at 1615.778 kb on - strand, within SM_b20602 at 1615.778 kb on - strand, within SM_b20602 at 1615.842 kb on - strand, within SM_b20602 at 1616.047 kb on - strand, within SM_b20602 at 1616.110 kb on + strand at 1616.110 kb on + strand at 1616.111 kb on - strand at 1616.111 kb on - strand at 1616.248 kb on - strand at 1616.351 kb on + strand, within SM_b20603 at 1616.351 kb on + strand, within SM_b20603 at 1616.351 kb on + strand, within SM_b20603 at 1616.352 kb on - strand, within SM_b20603 at 1616.352 kb on - strand, within SM_b20603 at 1616.429 kb on + strand, within SM_b20603 at 1616.429 kb on + strand, within SM_b20603 at 1616.429 kb on + strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.430 kb on - strand, within SM_b20603 at 1616.496 kb on + strand, within SM_b20603 at 1616.497 kb on - strand, within SM_b20603 at 1616.811 kb on + strand, within SM_b20603 at 1616.811 kb on + strand, within SM_b20603 at 1616.812 kb on - strand, within SM_b20603 at 1616.841 kb on + strand, within SM_b20603 at 1616.841 kb on + strand, within SM_b20603 at 1616.842 kb on - strand, within SM_b20603 at 1616.842 kb on - strand, within SM_b20603 at 1616.842 kb on - strand, within SM_b20603 at 1617.016 kb on - strand, within SM_b20603 at 1617.048 kb on + strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603 at 1617.049 kb on - strand, within SM_b20603
Per-strain Table
Position Strand Gene LocusTag Fraction pipercolic (C) remove 1,614,450 + -0.7 1,614,685 - +0.4 1,614,759 - SM_b21707 0.12 -0.5 1,614,760 + SM_b21707 0.12 -0.1 1,614,760 + SM_b21707 0.12 +1.1 1,614,760 + SM_b21707 0.12 +0.2 1,614,760 + SM_b21707 0.12 -0.2 1,614,760 + SM_b21707 0.12 +1.4 1,614,761 - SM_b21707 0.12 +0.3 1,614,797 - SM_b21707 0.18 +0.4 1,614,797 - SM_b21707 0.18 +0.5 1,614,797 - SM_b21707 0.18 -0.7 1,614,842 - SM_b21707 0.24 -0.1 1,615,026 + SM_b21707 0.50 -0.3 1,615,026 + SM_b21707 0.50 -0.7 1,615,026 + SM_b21707 0.50 -0.0 1,615,026 + SM_b21707 0.50 +0.9 1,615,027 - SM_b21707 0.51 -0.2 1,615,027 - +0.4 1,615,027 - SM_b21707 0.51 -0.3 1,615,027 - SM_b21707 0.51 -0.0 1,615,027 - SM_b21707 0.51 -0.4 1,615,027 - SM_b21707 0.51 +0.3 1,615,027 - SM_b21707 0.51 -0.3 1,615,027 - SM_b21707 0.51 -0.9 1,615,027 - SM_b21707 0.51 +0.1 1,615,028 + SM_b21707 0.51 +1.0 1,615,028 + SM_b21707 0.51 -2.0 1,615,029 - SM_b21707 0.51 -0.4 1,615,029 - SM_b21707 0.51 -1.1 1,615,132 + SM_b21707 0.66 -0.9 1,615,340 - +0.0 1,615,402 + -1.0 1,615,402 + +0.0 1,615,402 + -0.4 1,615,402 + +0.7 1,615,402 + +0.1 1,615,403 - -0.3 1,615,778 - SM_b20602 0.52 -1.1 1,615,778 - SM_b20602 0.52 -1.7 1,615,842 - SM_b20602 0.60 -0.5 1,616,047 - SM_b20602 0.87 +0.2 1,616,110 + -0.3 1,616,110 + +0.2 1,616,111 - -0.3 1,616,111 - -0.1 1,616,248 - +0.0 1,616,351 + SM_b20603 0.17 -0.0 1,616,351 + SM_b20603 0.17 +0.1 1,616,351 + SM_b20603 0.17 -0.6 1,616,352 - SM_b20603 0.17 -0.8 1,616,352 - SM_b20603 0.17 +0.4 1,616,429 + SM_b20603 0.24 -0.6 1,616,429 + SM_b20603 0.24 -1.1 1,616,429 + SM_b20603 0.24 +0.2 1,616,430 - SM_b20603 0.24 -0.1 1,616,430 - SM_b20603 0.24 +1.0 1,616,430 - SM_b20603 0.24 +1.4 1,616,430 - SM_b20603 0.24 +0.3 1,616,496 + SM_b20603 0.30 -0.4 1,616,497 - SM_b20603 0.30 -1.2 1,616,811 + SM_b20603 0.56 -0.7 1,616,811 + SM_b20603 0.56 +0.2 1,616,812 - SM_b20603 0.57 +0.9 1,616,841 + SM_b20603 0.59 +0.4 1,616,841 + SM_b20603 0.59 +1.2 1,616,842 - SM_b20603 0.59 +0.4 1,616,842 - SM_b20603 0.59 -0.1 1,616,842 - SM_b20603 0.59 +0.7 1,617,016 - SM_b20603 0.74 -0.1 1,617,048 + SM_b20603 0.77 -0.5 1,617,049 - SM_b20603 0.77 -0.9 1,617,049 - SM_b20603 0.77 +0.1 1,617,049 - SM_b20603 0.77 -1.1 1,617,049 - SM_b20603 0.77 -0.0
Or see this region's nucleotide sequence