Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS19145 and RALBFv3_RS19150 are separated by 91 nucleotides RALBFv3_RS19150 and RALBFv3_RS19155 are separated by 24 nucleotides RALBFv3_RS19155 and RALBFv3_RS19160 are separated by 712 nucleotides
RALBFv3_RS19145: RALBFv3_RS19145 - DegT/DnrJ/EryC1/StrS aminotransferase family protein, at 870,186 to 871,373
_RS19145
RALBFv3_RS19150: RALBFv3_RS19150 - membrane protein, at 871,465 to 872,139
_RS19150
RALBFv3_RS19155: RALBFv3_RS19155 - polysaccharide biosynthesis protein, at 872,164 to 874,164
_RS19155
RALBFv3_RS19160: RALBFv3_RS19160 - hypothetical protein, at 874,877 to 875,800
_RS19160
Position (kb) 872
873
874
875 Strain fitness (log2 ratio) -2
-1
0
1
2 at 871.188 kb on + strand, within RALBFv3_RS19145 at 871.678 kb on + strand, within RALBFv3_RS19150 at 871.678 kb on + strand, within RALBFv3_RS19150 at 871.678 kb on + strand, within RALBFv3_RS19150 at 871.678 kb on + strand, within RALBFv3_RS19150 at 871.678 kb on + strand, within RALBFv3_RS19150 at 871.679 kb on - strand, within RALBFv3_RS19150 at 871.679 kb on - strand, within RALBFv3_RS19150 at 871.771 kb on + strand, within RALBFv3_RS19150 at 871.771 kb on - strand, within RALBFv3_RS19150 at 871.834 kb on + strand, within RALBFv3_RS19150 at 871.835 kb on - strand, within RALBFv3_RS19150 at 871.949 kb on + strand, within RALBFv3_RS19150 at 871.950 kb on - strand, within RALBFv3_RS19150 at 872.063 kb on - strand, within RALBFv3_RS19150 at 872.166 kb on - strand at 872.303 kb on + strand at 872.304 kb on - strand at 872.313 kb on - strand at 872.313 kb on - strand at 872.492 kb on + strand, within RALBFv3_RS19155 at 872.492 kb on + strand, within RALBFv3_RS19155 at 872.493 kb on - strand, within RALBFv3_RS19155 at 872.712 kb on - strand, within RALBFv3_RS19155 at 872.953 kb on + strand, within RALBFv3_RS19155 at 872.961 kb on - strand, within RALBFv3_RS19155 at 873.054 kb on - strand, within RALBFv3_RS19155 at 873.068 kb on + strand, within RALBFv3_RS19155 at 873.191 kb on + strand, within RALBFv3_RS19155 at 873.312 kb on - strand, within RALBFv3_RS19155 at 873.441 kb on + strand, within RALBFv3_RS19155 at 873.442 kb on - strand, within RALBFv3_RS19155 at 873.573 kb on + strand, within RALBFv3_RS19155 at 873.573 kb on + strand, within RALBFv3_RS19155 at 873.575 kb on + strand, within RALBFv3_RS19155 at 873.791 kb on + strand, within RALBFv3_RS19155 at 873.791 kb on + strand, within RALBFv3_RS19155 at 873.813 kb on - strand, within RALBFv3_RS19155 at 873.869 kb on + strand, within RALBFv3_RS19155 at 873.869 kb on + strand, within RALBFv3_RS19155 at 873.930 kb on + strand, within RALBFv3_RS19155 at 873.932 kb on + strand, within RALBFv3_RS19155 at 873.933 kb on - strand, within RALBFv3_RS19155 at 873.966 kb on - strand at 873.966 kb on - strand at 873.966 kb on - strand at 874.072 kb on + strand at 874.072 kb on + strand at 874.073 kb on - strand at 874.480 kb on - strand at 874.480 kb on - strand at 874.480 kb on - strand at 874.526 kb on + strand at 874.571 kb on - strand at 874.571 kb on - strand at 874.713 kb on - strand at 874.749 kb on + strand at 874.750 kb on - strand at 874.932 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 871,188 + RALBFv3_RS19145 0.84 -1.9 871,678 + RALBFv3_RS19150 0.32 +0.5 871,678 + RALBFv3_RS19150 0.32 -0.4 871,678 + RALBFv3_RS19150 0.32 +0.3 871,678 + RALBFv3_RS19150 0.32 +1.0 871,678 + RALBFv3_RS19150 0.32 -1.0 871,679 - RALBFv3_RS19150 0.32 -0.8 871,679 - RALBFv3_RS19150 0.32 +0.2 871,771 + RALBFv3_RS19150 0.45 -0.0 871,771 - RALBFv3_RS19150 0.45 +0.0 871,834 + RALBFv3_RS19150 0.55 -0.4 871,835 - RALBFv3_RS19150 0.55 +1.0 871,949 + RALBFv3_RS19150 0.72 +1.3 871,950 - RALBFv3_RS19150 0.72 +0.7 872,063 - RALBFv3_RS19150 0.89 -0.7 872,166 - +0.8 872,303 + +0.3 872,304 - +0.2 872,313 - +0.8 872,313 - -1.7 872,492 + RALBFv3_RS19155 0.16 +1.5 872,492 + RALBFv3_RS19155 0.16 +1.2 872,493 - RALBFv3_RS19155 0.16 +0.3 872,712 - RALBFv3_RS19155 0.27 +0.4 872,953 + RALBFv3_RS19155 0.39 +0.7 872,961 - RALBFv3_RS19155 0.40 -0.5 873,054 - RALBFv3_RS19155 0.44 +0.3 873,068 + RALBFv3_RS19155 0.45 +2.3 873,191 + RALBFv3_RS19155 0.51 +0.3 873,312 - RALBFv3_RS19155 0.57 +0.7 873,441 + RALBFv3_RS19155 0.64 +0.4 873,442 - RALBFv3_RS19155 0.64 +1.0 873,573 + RALBFv3_RS19155 0.70 +0.7 873,573 + RALBFv3_RS19155 0.70 +0.9 873,575 + RALBFv3_RS19155 0.71 +0.3 873,791 + RALBFv3_RS19155 0.81 +1.3 873,791 + RALBFv3_RS19155 0.81 -0.3 873,813 - RALBFv3_RS19155 0.82 +0.7 873,869 + RALBFv3_RS19155 0.85 +0.4 873,869 + RALBFv3_RS19155 0.85 -0.5 873,930 + RALBFv3_RS19155 0.88 +1.0 873,932 + RALBFv3_RS19155 0.88 +1.1 873,933 - RALBFv3_RS19155 0.88 +0.7 873,966 - +1.8 873,966 - +2.3 873,966 - +1.2 874,072 + +1.3 874,072 + +0.1 874,073 - +1.0 874,480 - -0.6 874,480 - +0.8 874,480 - +0.6 874,526 + +0.9 874,571 - +1.2 874,571 - -0.8 874,713 - +1.9 874,749 + +0.6 874,750 - +0.7 874,932 - +0.8
Or see this region's nucleotide sequence