Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS17120 and RALBFv3_RS17125 are separated by 22 nucleotides RALBFv3_RS17125 and RALBFv3_RS17130 are separated by 112 nucleotides
RALBFv3_RS17120: RALBFv3_RS17120 - GntR family transcriptional regulator, at 331,450 to 332,106
_RS17120
RALBFv3_RS17125: RALBFv3_RS17125 - LysR family transcriptional regulator, at 332,129 to 332,344
_RS17125
RALBFv3_RS17130: RALBFv3_RS17130 - putative type III effector protein, at 332,457 to 333,755
_RS17130
Position (kb) 332
333 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 331.200 kb on + strand at 331.201 kb on - strand at 331.216 kb on + strand at 331.222 kb on + strand at 331.234 kb on + strand at 331.234 kb on + strand at 331.234 kb on + strand at 331.235 kb on - strand at 331.244 kb on + strand at 331.244 kb on + strand at 331.245 kb on - strand at 331.246 kb on + strand at 331.246 kb on + strand at 331.247 kb on - strand at 331.247 kb on - strand at 331.247 kb on - strand at 331.247 kb on - strand at 331.250 kb on + strand at 331.250 kb on + strand at 331.272 kb on + strand at 331.273 kb on - strand at 331.429 kb on - strand at 331.488 kb on + strand at 331.624 kb on + strand, within RALBFv3_RS17120 at 331.754 kb on + strand, within RALBFv3_RS17120 at 331.754 kb on + strand, within RALBFv3_RS17120 at 331.780 kb on + strand, within RALBFv3_RS17120 at 331.780 kb on + strand, within RALBFv3_RS17120 at 331.780 kb on + strand, within RALBFv3_RS17120 at 331.780 kb on + strand, within RALBFv3_RS17120 at 331.780 kb on + strand, within RALBFv3_RS17120 at 331.781 kb on - strand, within RALBFv3_RS17120 at 332.065 kb on + strand at 332.065 kb on + strand at 332.065 kb on + strand at 332.066 kb on - strand at 332.422 kb on + strand at 332.423 kb on - strand at 332.424 kb on + strand at 332.424 kb on + strand at 332.425 kb on - strand at 332.457 kb on - strand at 332.646 kb on + strand, within RALBFv3_RS17130 at 332.646 kb on + strand, within RALBFv3_RS17130 at 332.646 kb on + strand, within RALBFv3_RS17130 at 332.646 kb on + strand, within RALBFv3_RS17130 at 332.646 kb on + strand, within RALBFv3_RS17130 at 332.762 kb on + strand, within RALBFv3_RS17130 at 332.763 kb on - strand, within RALBFv3_RS17130 at 332.763 kb on - strand, within RALBFv3_RS17130 at 332.763 kb on - strand, within RALBFv3_RS17130 at 332.857 kb on + strand, within RALBFv3_RS17130 at 332.857 kb on + strand, within RALBFv3_RS17130 at 332.857 kb on + strand, within RALBFv3_RS17130 at 332.858 kb on - strand, within RALBFv3_RS17130 at 332.858 kb on - strand, within RALBFv3_RS17130 at 332.858 kb on - strand, within RALBFv3_RS17130 at 332.858 kb on - strand, within RALBFv3_RS17130 at 332.887 kb on - strand, within RALBFv3_RS17130 at 332.887 kb on - strand, within RALBFv3_RS17130 at 332.942 kb on + strand, within RALBFv3_RS17130 at 332.943 kb on - strand, within RALBFv3_RS17130 at 332.943 kb on - strand, within RALBFv3_RS17130 at 332.943 kb on - strand, within RALBFv3_RS17130 at 332.944 kb on - strand, within RALBFv3_RS17130 at 333.027 kb on + strand, within RALBFv3_RS17130 at 333.028 kb on - strand, within RALBFv3_RS17130 at 333.222 kb on + strand, within RALBFv3_RS17130 at 333.222 kb on + strand, within RALBFv3_RS17130 at 333.222 kb on + strand, within RALBFv3_RS17130 at 333.223 kb on - strand, within RALBFv3_RS17130 at 333.226 kb on + strand, within RALBFv3_RS17130 at 333.227 kb on - strand, within RALBFv3_RS17130 at 333.333 kb on - strand, within RALBFv3_RS17130
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 331,200 + -1.0 331,201 - +0.4 331,216 + +0.9 331,222 + -0.1 331,234 + +1.5 331,234 + +0.5 331,234 + -1.1 331,235 - +0.6 331,244 + -0.0 331,244 + +1.5 331,245 - +0.2 331,246 + -0.2 331,246 + -0.1 331,247 - -1.2 331,247 - -1.0 331,247 - +1.1 331,247 - +0.2 331,250 + +0.1 331,250 + +0.8 331,272 + +0.1 331,273 - -0.0 331,429 - -1.0 331,488 + +0.7 331,624 + RALBFv3_RS17120 0.26 -0.4 331,754 + RALBFv3_RS17120 0.46 -1.3 331,754 + RALBFv3_RS17120 0.46 +0.5 331,780 + RALBFv3_RS17120 0.50 -0.1 331,780 + RALBFv3_RS17120 0.50 +0.5 331,780 + RALBFv3_RS17120 0.50 +0.2 331,780 + RALBFv3_RS17120 0.50 -1.3 331,780 + RALBFv3_RS17120 0.50 +2.5 331,781 - RALBFv3_RS17120 0.50 +0.7 332,065 + +0.6 332,065 + -0.8 332,065 + +1.5 332,066 - +2.5 332,422 + +0.8 332,423 - -0.6 332,424 + -0.4 332,424 + +0.9 332,425 - -0.8 332,457 - -0.5 332,646 + RALBFv3_RS17130 0.15 +0.4 332,646 + RALBFv3_RS17130 0.15 +0.5 332,646 + RALBFv3_RS17130 0.15 -1.3 332,646 + RALBFv3_RS17130 0.15 -0.6 332,646 + RALBFv3_RS17130 0.15 -0.3 332,762 + RALBFv3_RS17130 0.23 -2.1 332,763 - RALBFv3_RS17130 0.24 -0.4 332,763 - RALBFv3_RS17130 0.24 +0.2 332,763 - RALBFv3_RS17130 0.24 -0.2 332,857 + RALBFv3_RS17130 0.31 +0.5 332,857 + RALBFv3_RS17130 0.31 +0.3 332,857 + RALBFv3_RS17130 0.31 -1.0 332,858 - RALBFv3_RS17130 0.31 +0.2 332,858 - RALBFv3_RS17130 0.31 -0.1 332,858 - RALBFv3_RS17130 0.31 +0.4 332,858 - RALBFv3_RS17130 0.31 -0.1 332,887 - RALBFv3_RS17130 0.33 +0.9 332,887 - RALBFv3_RS17130 0.33 -0.3 332,942 + RALBFv3_RS17130 0.37 -0.5 332,943 - RALBFv3_RS17130 0.37 -0.1 332,943 - RALBFv3_RS17130 0.37 -0.2 332,943 - RALBFv3_RS17130 0.37 -0.8 332,944 - RALBFv3_RS17130 0.37 +2.8 333,027 + RALBFv3_RS17130 0.44 +0.2 333,028 - RALBFv3_RS17130 0.44 -0.1 333,222 + RALBFv3_RS17130 0.59 -0.1 333,222 + RALBFv3_RS17130 0.59 +3.1 333,222 + RALBFv3_RS17130 0.59 -0.2 333,223 - RALBFv3_RS17130 0.59 -0.0 333,226 + RALBFv3_RS17130 0.59 +0.6 333,227 - RALBFv3_RS17130 0.59 +2.5 333,333 - RALBFv3_RS17130 0.67 -0.3
Or see this region's nucleotide sequence