Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS15305

Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS15295 and RALBFv3_RS15300 are separated by 305 nucleotidesRALBFv3_RS15300 and RALBFv3_RS15305 are separated by 78 nucleotidesRALBFv3_RS15305 and RALBFv3_RS15310 are separated by 56 nucleotides RALBFv3_RS15295: RALBFv3_RS15295 - ribosome biogenesis GTPase Der, at 3,330,382 to 3,331,725 _RS15295 RALBFv3_RS15300: RALBFv3_RS15300 - RNA-binding protein Hfq, at 3,332,031 to 3,332,270 _RS15300 RALBFv3_RS15305: RALBFv3_RS15305 - GTPase HflX, at 3,332,349 to 3,333,602 _RS15305 RALBFv3_RS15310: RALBFv3_RS15310 - FtsH protease activity modulator HflK, at 3,333,659 to 3,335,038 _RS15310 Position (kb) 3332 3333 3334Strain fitness (log2 ratio) -3 -2 -1 0 1at 3332.012 kb on + strandat 3333.604 kb on - strandat 3334.301 kb on + strand, within RALBFv3_RS15310at 3334.598 kb on + strand, within RALBFv3_RS15310

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
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3,332,012 + +1.5
3,333,604 - -1.3
3,334,301 + RALBFv3_RS15310 0.47 -2.8
3,334,598 + RALBFv3_RS15310 0.68 -2.3

Or see this region's nucleotide sequence