Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03370 and RALBFv3_RS03375 are separated by 49 nucleotides RALBFv3_RS03375 and RALBFv3_RS03380 are separated by 143 nucleotides RALBFv3_RS03380 and RALBFv3_RS03390 are separated by 12 nucleotides
RALBFv3_RS03370: RALBFv3_RS03370 - DUF1851 domain-containing protein, at 735,177 to 735,794
_RS03370
RALBFv3_RS03375: RALBFv3_RS03375 - hypothetical protein, at 735,844 to 736,107
_RS03375
RALBFv3_RS03380: RALBFv3_RS03380 - IS3 family transposase, at 736,251 to 737,485
_RS03380
RALBFv3_RS03390: RALBFv3_RS03390 - hemagglutinin-related protein, at 737,498 to 739,828
_RS03390
Position (kb) 736
737
738 Strain fitness (log2 ratio) -2
-1
0
1
2 at 735.343 kb on + strand, within RALBFv3_RS03370 at 735.344 kb on - strand, within RALBFv3_RS03370 at 735.412 kb on + strand, within RALBFv3_RS03370 at 735.413 kb on - strand, within RALBFv3_RS03370 at 735.517 kb on - strand, within RALBFv3_RS03370 at 735.632 kb on + strand, within RALBFv3_RS03370 at 735.652 kb on + strand, within RALBFv3_RS03370 at 735.758 kb on + strand at 735.758 kb on + strand at 735.759 kb on - strand at 735.759 kb on - strand at 735.795 kb on - strand at 735.856 kb on - strand at 737.566 kb on + strand at 737.579 kb on - strand at 737.683 kb on + strand at 737.747 kb on + strand, within RALBFv3_RS03390 at 737.984 kb on - strand, within RALBFv3_RS03390 at 737.984 kb on - strand, within RALBFv3_RS03390 at 738.044 kb on + strand, within RALBFv3_RS03390 at 738.045 kb on - strand, within RALBFv3_RS03390 at 738.060 kb on - strand, within RALBFv3_RS03390 at 738.060 kb on - strand, within RALBFv3_RS03390 at 738.143 kb on + strand, within RALBFv3_RS03390 at 738.143 kb on + strand, within RALBFv3_RS03390 at 738.144 kb on - strand, within RALBFv3_RS03390 at 738.144 kb on - strand, within RALBFv3_RS03390 at 738.144 kb on - strand, within RALBFv3_RS03390 at 738.148 kb on + strand, within RALBFv3_RS03390 at 738.149 kb on - strand, within RALBFv3_RS03390 at 738.149 kb on - strand, within RALBFv3_RS03390 at 738.149 kb on - strand, within RALBFv3_RS03390 at 738.226 kb on + strand, within RALBFv3_RS03390 at 738.260 kb on - strand, within RALBFv3_RS03390 at 738.277 kb on + strand, within RALBFv3_RS03390 at 738.278 kb on - strand, within RALBFv3_RS03390 at 738.301 kb on - strand, within RALBFv3_RS03390 at 738.367 kb on + strand, within RALBFv3_RS03390 at 738.391 kb on + strand, within RALBFv3_RS03390 at 738.391 kb on + strand, within RALBFv3_RS03390 at 738.391 kb on + strand, within RALBFv3_RS03390 at 738.391 kb on + strand, within RALBFv3_RS03390 at 738.451 kb on - strand, within RALBFv3_RS03390
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 735,343 + RALBFv3_RS03370 0.27 -0.4 735,344 - RALBFv3_RS03370 0.27 -0.5 735,412 + RALBFv3_RS03370 0.38 -1.2 735,413 - RALBFv3_RS03370 0.38 -0.0 735,517 - RALBFv3_RS03370 0.55 -0.3 735,632 + RALBFv3_RS03370 0.74 -1.1 735,652 + RALBFv3_RS03370 0.77 -0.7 735,758 + -0.0 735,758 + -0.8 735,759 - +1.0 735,759 - -0.1 735,795 - -0.7 735,856 - -0.4 737,566 + -0.4 737,579 - -0.0 737,683 + +0.0 737,747 + RALBFv3_RS03390 0.11 +2.3 737,984 - RALBFv3_RS03390 0.21 +0.2 737,984 - RALBFv3_RS03390 0.21 -1.6 738,044 + RALBFv3_RS03390 0.23 -0.1 738,045 - RALBFv3_RS03390 0.23 +0.7 738,060 - RALBFv3_RS03390 0.24 +0.2 738,060 - RALBFv3_RS03390 0.24 -1.6 738,143 + RALBFv3_RS03390 0.28 -1.6 738,143 + RALBFv3_RS03390 0.28 -0.9 738,144 - RALBFv3_RS03390 0.28 +1.2 738,144 - RALBFv3_RS03390 0.28 -0.2 738,144 - RALBFv3_RS03390 0.28 +1.6 738,148 + RALBFv3_RS03390 0.28 -0.3 738,149 - RALBFv3_RS03390 0.28 -0.4 738,149 - RALBFv3_RS03390 0.28 +2.6 738,149 - RALBFv3_RS03390 0.28 +0.0 738,226 + RALBFv3_RS03390 0.31 -0.1 738,260 - RALBFv3_RS03390 0.33 +0.6 738,277 + RALBFv3_RS03390 0.33 -0.3 738,278 - RALBFv3_RS03390 0.33 +1.2 738,301 - RALBFv3_RS03390 0.34 -0.3 738,367 + RALBFv3_RS03390 0.37 -0.6 738,391 + RALBFv3_RS03390 0.38 +0.9 738,391 + RALBFv3_RS03390 0.38 -0.7 738,391 + RALBFv3_RS03390 0.38 -0.2 738,391 + RALBFv3_RS03390 0.38 -2.3 738,451 - RALBFv3_RS03390 0.41 -0.1
Or see this region's nucleotide sequence