Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03255 and RALBFv3_RS03260 are separated by 115 nucleotides RALBFv3_RS03260 and RALBFv3_RS03265 are separated by 292 nucleotides
RALBFv3_RS03255: RALBFv3_RS03255 - porin, at 710,953 to 712,017
_RS03255
RALBFv3_RS03260: RALBFv3_RS03260 - NADP-dependent malic enzyme, at 712,133 to 714,454
_RS03260
RALBFv3_RS03265: RALBFv3_RS03265 - DUF4136 domain-containing protein, at 714,747 to 715,388
_RS03265
Position (kb) 712
713
714
715 Strain fitness (log2 ratio) -2
-1
0
1 at 712.882 kb on - strand, within RALBFv3_RS03260 at 713.277 kb on + strand, within RALBFv3_RS03260 at 713.277 kb on + strand, within RALBFv3_RS03260 at 713.278 kb on - strand, within RALBFv3_RS03260 at 713.278 kb on - strand, within RALBFv3_RS03260 at 713.311 kb on - strand, within RALBFv3_RS03260 at 713.311 kb on - strand, within RALBFv3_RS03260 at 713.433 kb on + strand, within RALBFv3_RS03260 at 713.434 kb on - strand, within RALBFv3_RS03260 at 713.469 kb on + strand, within RALBFv3_RS03260 at 713.688 kb on + strand, within RALBFv3_RS03260 at 713.730 kb on + strand, within RALBFv3_RS03260 at 713.974 kb on - strand, within RALBFv3_RS03260 at 714.273 kb on + strand at 714.373 kb on - strand at 714.454 kb on + strand at 714.455 kb on - strand at 714.455 kb on - strand at 714.700 kb on + strand at 714.701 kb on - strand at 714.714 kb on + strand at 714.715 kb on - strand at 714.715 kb on - strand at 714.719 kb on + strand at 714.844 kb on + strand, within RALBFv3_RS03265 at 714.944 kb on - strand, within RALBFv3_RS03265 at 714.944 kb on - strand, within RALBFv3_RS03265 at 714.949 kb on + strand, within RALBFv3_RS03265 at 714.949 kb on + strand, within RALBFv3_RS03265 at 714.949 kb on + strand, within RALBFv3_RS03265 at 714.950 kb on - strand, within RALBFv3_RS03265 at 714.950 kb on - strand, within RALBFv3_RS03265 at 715.102 kb on + strand, within RALBFv3_RS03265 at 715.189 kb on + strand, within RALBFv3_RS03265 at 715.189 kb on + strand, within RALBFv3_RS03265 at 715.189 kb on + strand, within RALBFv3_RS03265 at 715.190 kb on - strand, within RALBFv3_RS03265 at 715.190 kb on - strand, within RALBFv3_RS03265 at 715.240 kb on + strand, within RALBFv3_RS03265 at 715.240 kb on + strand, within RALBFv3_RS03265 at 715.241 kb on - strand, within RALBFv3_RS03265 at 715.241 kb on - strand, within RALBFv3_RS03265
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 712,882 - RALBFv3_RS03260 0.32 -1.6 713,277 + RALBFv3_RS03260 0.49 -0.5 713,277 + RALBFv3_RS03260 0.49 -1.8 713,278 - RALBFv3_RS03260 0.49 -1.0 713,278 - RALBFv3_RS03260 0.49 +1.5 713,311 - RALBFv3_RS03260 0.51 -0.5 713,311 - RALBFv3_RS03260 0.51 -1.3 713,433 + RALBFv3_RS03260 0.56 -0.2 713,434 - RALBFv3_RS03260 0.56 -1.6 713,469 + RALBFv3_RS03260 0.58 -0.5 713,688 + RALBFv3_RS03260 0.67 +0.9 713,730 + RALBFv3_RS03260 0.69 -0.0 713,974 - RALBFv3_RS03260 0.79 -1.0 714,273 + +0.4 714,373 - +0.1 714,454 + -0.6 714,455 - -0.2 714,455 - -1.5 714,700 + -0.5 714,701 - -0.4 714,714 + +1.5 714,715 - -0.6 714,715 - -0.6 714,719 + -0.9 714,844 + RALBFv3_RS03265 0.15 +0.1 714,944 - RALBFv3_RS03265 0.31 -0.3 714,944 - RALBFv3_RS03265 0.31 +0.7 714,949 + RALBFv3_RS03265 0.31 -0.3 714,949 + RALBFv3_RS03265 0.31 +0.4 714,949 + RALBFv3_RS03265 0.31 -0.5 714,950 - RALBFv3_RS03265 0.32 -0.1 714,950 - RALBFv3_RS03265 0.32 +1.1 715,102 + RALBFv3_RS03265 0.55 +1.5 715,189 + RALBFv3_RS03265 0.69 -0.8 715,189 + RALBFv3_RS03265 0.69 -0.5 715,189 + RALBFv3_RS03265 0.69 -0.0 715,190 - RALBFv3_RS03265 0.69 -0.6 715,190 - RALBFv3_RS03265 0.69 +1.5 715,240 + RALBFv3_RS03265 0.77 +0.3 715,240 + RALBFv3_RS03265 0.77 -0.0 715,241 - RALBFv3_RS03265 0.77 -0.5 715,241 - RALBFv3_RS03265 0.77 -0.0
Or see this region's nucleotide sequence