Experiment: Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00975 and RALBFv3_RS00980 overlap by 4 nucleotides RALBFv3_RS00980 and RALBFv3_RS00985 are separated by 2 nucleotides RALBFv3_RS00985 and RALBFv3_RS00990 overlap by 4 nucleotides
RALBFv3_RS00975: RALBFv3_RS00975 - ABC transporter permease, at 216,413 to 217,210
_RS00975
RALBFv3_RS00980: RALBFv3_RS00980 - ABC transporter permease, at 217,207 to 218,055
_RS00980
RALBFv3_RS00985: RALBFv3_RS00985 - ABC transporter substrate-binding protein, at 218,058 to 219,101
_RS00985
RALBFv3_RS00990: RALBFv3_RS00990 - LacI family transcriptional regulator, at 219,098 to 220,204
_RS00990
Position (kb) 218
219
220 Strain fitness (log2 ratio) -1
0
1
2 at 217.105 kb on - strand, within RALBFv3_RS00975 at 217.105 kb on - strand, within RALBFv3_RS00975 at 217.337 kb on + strand, within RALBFv3_RS00980 at 217.337 kb on + strand, within RALBFv3_RS00980 at 217.337 kb on + strand, within RALBFv3_RS00980 at 217.581 kb on - strand, within RALBFv3_RS00980 at 217.581 kb on - strand, within RALBFv3_RS00980 at 217.896 kb on - strand, within RALBFv3_RS00980 at 218.077 kb on + strand at 218.077 kb on + strand at 218.144 kb on - strand at 218.212 kb on + strand, within RALBFv3_RS00985 at 218.212 kb on + strand, within RALBFv3_RS00985 at 218.314 kb on + strand, within RALBFv3_RS00985 at 218.375 kb on - strand, within RALBFv3_RS00985 at 218.375 kb on - strand, within RALBFv3_RS00985 at 218.402 kb on - strand, within RALBFv3_RS00985 at 218.612 kb on - strand, within RALBFv3_RS00985 at 218.977 kb on + strand, within RALBFv3_RS00985 at 218.977 kb on + strand, within RALBFv3_RS00985 at 218.977 kb on + strand, within RALBFv3_RS00985 at 218.978 kb on - strand, within RALBFv3_RS00985 at 218.978 kb on - strand, within RALBFv3_RS00985 at 219.119 kb on - strand at 219.189 kb on + strand at 219.190 kb on - strand at 219.190 kb on - strand at 219.765 kb on + strand, within RALBFv3_RS00990 at 219.777 kb on + strand, within RALBFv3_RS00990 at 219.778 kb on - strand, within RALBFv3_RS00990
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_CU3; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 217,105 - RALBFv3_RS00975 0.87 +0.2 217,105 - RALBFv3_RS00975 0.87 -1.3 217,337 + RALBFv3_RS00980 0.15 -1.7 217,337 + RALBFv3_RS00980 0.15 +0.9 217,337 + RALBFv3_RS00980 0.15 +0.9 217,581 - RALBFv3_RS00980 0.44 +0.1 217,581 - RALBFv3_RS00980 0.44 +2.5 217,896 - RALBFv3_RS00980 0.81 +1.8 218,077 + +0.3 218,077 + +1.1 218,144 - +0.1 218,212 + RALBFv3_RS00985 0.15 -0.0 218,212 + RALBFv3_RS00985 0.15 -0.0 218,314 + RALBFv3_RS00985 0.25 -1.5 218,375 - RALBFv3_RS00985 0.30 -1.1 218,375 - RALBFv3_RS00985 0.30 +0.4 218,402 - RALBFv3_RS00985 0.33 -0.0 218,612 - RALBFv3_RS00985 0.53 -0.1 218,977 + RALBFv3_RS00985 0.88 -0.2 218,977 + RALBFv3_RS00985 0.88 +0.8 218,977 + RALBFv3_RS00985 0.88 +0.7 218,978 - RALBFv3_RS00985 0.88 +0.2 218,978 - RALBFv3_RS00985 0.88 -0.7 219,119 - -1.3 219,189 + -0.4 219,190 - +0.3 219,190 - +1.6 219,765 + RALBFv3_RS00990 0.60 +0.3 219,777 + RALBFv3_RS00990 0.61 +0.2 219,778 - RALBFv3_RS00990 0.61 +0.5
Or see this region's nucleotide sequence