Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS23055

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS23045 and ABZR87_RS23050 are separated by 7 nucleotidesABZR87_RS23050 and ABZR87_RS23055 are separated by 34 nucleotidesABZR87_RS23055 and ABZR87_RS23060 are separated by 157 nucleotides ABZR87_RS23045: ABZR87_RS23045 - Nramp family divalent metal transporter, at 1,529,788 to 1,531,059 _RS23045 ABZR87_RS23050: ABZR87_RS23050 - hypothetical protein, at 1,531,067 to 1,531,333 _RS23050 ABZR87_RS23055: ABZR87_RS23055 - YetF domain-containing protein, at 1,531,368 to 1,531,859 _RS23055 ABZR87_RS23060: ABZR87_RS23060 - SDR family oxidoreductase, at 1,532,017 to 1,532,877 _RS23060 Position (kb) 1531 1532Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1530.461 kb on + strand, within ABZR87_RS23045at 1530.461 kb on + strand, within ABZR87_RS23045at 1530.462 kb on - strand, within ABZR87_RS23045at 1530.506 kb on + strand, within ABZR87_RS23045at 1530.506 kb on + strand, within ABZR87_RS23045at 1530.507 kb on - strand, within ABZR87_RS23045at 1530.593 kb on + strand, within ABZR87_RS23045at 1530.593 kb on + strand, within ABZR87_RS23045at 1530.593 kb on + strand, within ABZR87_RS23045at 1530.593 kb on + strand, within ABZR87_RS23045at 1530.593 kb on + strand, within ABZR87_RS23045at 1530.594 kb on - strand, within ABZR87_RS23045at 1530.594 kb on - strand, within ABZR87_RS23045at 1530.594 kb on - strand, within ABZR87_RS23045at 1530.594 kb on - strand, within ABZR87_RS23045at 1530.594 kb on - strand, within ABZR87_RS23045at 1530.626 kb on + strand, within ABZR87_RS23045at 1530.635 kb on + strand, within ABZR87_RS23045at 1530.696 kb on - strand, within ABZR87_RS23045at 1530.803 kb on + strand, within ABZR87_RS23045at 1530.803 kb on + strand, within ABZR87_RS23045at 1530.804 kb on - strand, within ABZR87_RS23045at 1530.966 kb on - strandat 1531.352 kb on - strandat 1531.352 kb on - strandat 1531.352 kb on - strandat 1531.352 kb on - strandat 1531.449 kb on + strand, within ABZR87_RS23055at 1531.639 kb on - strand, within ABZR87_RS23055at 1531.647 kb on + strand, within ABZR87_RS23055at 1531.647 kb on + strand, within ABZR87_RS23055at 1531.647 kb on + strand, within ABZR87_RS23055at 1531.648 kb on - strand, within ABZR87_RS23055at 1531.648 kb on - strand, within ABZR87_RS23055at 1531.704 kb on + strand, within ABZR87_RS23055at 1531.989 kb on - strandat 1532.233 kb on + strand, within ABZR87_RS23060at 1532.488 kb on + strand, within ABZR87_RS23060at 1532.488 kb on + strand, within ABZR87_RS23060at 1532.488 kb on + strand, within ABZR87_RS23060at 1532.488 kb on + strand, within ABZR87_RS23060at 1532.587 kb on + strand, within ABZR87_RS23060at 1532.588 kb on - strand, within ABZR87_RS23060at 1532.588 kb on - strand, within ABZR87_RS23060at 1532.710 kb on - strand, within ABZR87_RS23060at 1532.794 kb on + strandat 1532.794 kb on + strandat 1532.795 kb on - strandat 1532.795 kb on - strandat 1532.824 kb on + strandat 1532.824 kb on + strandat 1532.825 kb on - strandat 1532.825 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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1,530,461 + ABZR87_RS23045 0.53 -0.1
1,530,461 + ABZR87_RS23045 0.53 +1.6
1,530,462 - ABZR87_RS23045 0.53 +1.0
1,530,506 + ABZR87_RS23045 0.56 -2.4
1,530,506 + ABZR87_RS23045 0.56 -1.0
1,530,507 - ABZR87_RS23045 0.57 +0.6
1,530,593 + ABZR87_RS23045 0.63 +1.7
1,530,593 + ABZR87_RS23045 0.63 -0.4
1,530,593 + ABZR87_RS23045 0.63 -0.5
1,530,593 + ABZR87_RS23045 0.63 -0.6
1,530,593 + ABZR87_RS23045 0.63 -1.0
1,530,594 - ABZR87_RS23045 0.63 +0.5
1,530,594 - ABZR87_RS23045 0.63 -3.5
1,530,594 - ABZR87_RS23045 0.63 +0.7
1,530,594 - ABZR87_RS23045 0.63 -0.5
1,530,594 - ABZR87_RS23045 0.63 -0.1
1,530,626 + ABZR87_RS23045 0.66 +0.6
1,530,635 + ABZR87_RS23045 0.67 +1.5
1,530,696 - ABZR87_RS23045 0.71 +1.2
1,530,803 + ABZR87_RS23045 0.80 +0.5
1,530,803 + ABZR87_RS23045 0.80 +0.2
1,530,804 - ABZR87_RS23045 0.80 +1.0
1,530,966 - -2.1
1,531,352 - +1.4
1,531,352 - +1.6
1,531,352 - +1.9
1,531,352 - -2.0
1,531,449 + ABZR87_RS23055 0.16 -2.4
1,531,639 - ABZR87_RS23055 0.55 -0.8
1,531,647 + ABZR87_RS23055 0.57 +0.1
1,531,647 + ABZR87_RS23055 0.57 +0.2
1,531,647 + ABZR87_RS23055 0.57 -1.1
1,531,648 - ABZR87_RS23055 0.57 +2.3
1,531,648 - ABZR87_RS23055 0.57 +2.5
1,531,704 + ABZR87_RS23055 0.68 +0.5
1,531,989 - -1.7
1,532,233 + ABZR87_RS23060 0.25 +0.8
1,532,488 + ABZR87_RS23060 0.55 -1.5
1,532,488 + ABZR87_RS23060 0.55 -1.2
1,532,488 + ABZR87_RS23060 0.55 -0.7
1,532,488 + ABZR87_RS23060 0.55 -0.5
1,532,587 + ABZR87_RS23060 0.66 -2.7
1,532,588 - ABZR87_RS23060 0.66 -4.2
1,532,588 - ABZR87_RS23060 0.66 -2.2
1,532,710 - ABZR87_RS23060 0.80 +0.6
1,532,794 + +1.1
1,532,794 + -3.4
1,532,795 - -0.4
1,532,795 - +0.4
1,532,824 + +1.4
1,532,824 + +2.1
1,532,825 - -0.1
1,532,825 - -0.5

Or see this region's nucleotide sequence