Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21330

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21320 and ABZR87_RS21325 are separated by 110 nucleotidesABZR87_RS21325 and ABZR87_RS21330 are separated by 67 nucleotidesABZR87_RS21330 and ABZR87_RS21335 are separated by 117 nucleotides ABZR87_RS21320: ABZR87_RS21320 - putative zinc-binding metallopeptidase, at 1,164,939 to 1,166,063 _RS21320 ABZR87_RS21325: ABZR87_RS21325 - hypothetical protein, at 1,166,174 to 1,166,686 _RS21325 ABZR87_RS21330: ABZR87_RS21330 - chemotaxis protein, at 1,166,754 to 1,167,707 _RS21330 ABZR87_RS21335: ABZR87_RS21335 - LysR family transcriptional regulator, at 1,167,825 to 1,168,730 _RS21335 Position (kb) 1166 1167 1168Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1165.783 kb on - strand, within ABZR87_RS21320at 1165.821 kb on + strand, within ABZR87_RS21320at 1165.821 kb on + strand, within ABZR87_RS21320at 1165.822 kb on - strand, within ABZR87_RS21320at 1165.822 kb on - strand, within ABZR87_RS21320at 1165.932 kb on + strand, within ABZR87_RS21320at 1165.932 kb on + strand, within ABZR87_RS21320at 1165.932 kb on + strand, within ABZR87_RS21320at 1165.932 kb on + strand, within ABZR87_RS21320at 1165.932 kb on + strand, within ABZR87_RS21320at 1165.932 kb on + strand, within ABZR87_RS21320at 1165.932 kb on + strand, within ABZR87_RS21320at 1165.932 kb on + strand, within ABZR87_RS21320at 1165.932 kb on + strand, within ABZR87_RS21320at 1165.932 kb on + strand, within ABZR87_RS21320at 1165.932 kb on + strand, within ABZR87_RS21320at 1165.933 kb on - strand, within ABZR87_RS21320at 1165.933 kb on - strand, within ABZR87_RS21320at 1165.933 kb on - strand, within ABZR87_RS21320at 1165.933 kb on - strand, within ABZR87_RS21320at 1165.933 kb on - strand, within ABZR87_RS21320at 1165.933 kb on - strand, within ABZR87_RS21320at 1165.977 kb on + strandat 1166.111 kb on + strandat 1166.111 kb on + strandat 1166.112 kb on - strandat 1166.134 kb on - strandat 1166.296 kb on + strand, within ABZR87_RS21325at 1166.321 kb on + strand, within ABZR87_RS21325at 1166.321 kb on + strand, within ABZR87_RS21325at 1166.321 kb on + strand, within ABZR87_RS21325at 1166.322 kb on - strand, within ABZR87_RS21325at 1166.322 kb on - strand, within ABZR87_RS21325at 1166.322 kb on - strand, within ABZR87_RS21325at 1166.322 kb on - strand, within ABZR87_RS21325at 1166.354 kb on + strand, within ABZR87_RS21325at 1166.384 kb on + strand, within ABZR87_RS21325at 1166.384 kb on + strand, within ABZR87_RS21325at 1166.384 kb on + strand, within ABZR87_RS21325at 1166.385 kb on - strand, within ABZR87_RS21325at 1166.385 kb on - strand, within ABZR87_RS21325at 1166.453 kb on + strand, within ABZR87_RS21325at 1166.453 kb on + strand, within ABZR87_RS21325at 1166.453 kb on + strand, within ABZR87_RS21325at 1166.454 kb on - strand, within ABZR87_RS21325at 1166.528 kb on + strand, within ABZR87_RS21325at 1166.529 kb on - strand, within ABZR87_RS21325at 1166.561 kb on + strand, within ABZR87_RS21325at 1166.570 kb on + strand, within ABZR87_RS21325at 1166.570 kb on + strand, within ABZR87_RS21325at 1166.570 kb on + strand, within ABZR87_RS21325at 1166.570 kb on + strand, within ABZR87_RS21325at 1166.570 kb on + strand, within ABZR87_RS21325at 1166.570 kb on + strand, within ABZR87_RS21325at 1166.570 kb on + strand, within ABZR87_RS21325at 1166.571 kb on - strand, within ABZR87_RS21325at 1166.571 kb on - strand, within ABZR87_RS21325at 1166.571 kb on - strand, within ABZR87_RS21325at 1166.571 kb on - strand, within ABZR87_RS21325at 1166.571 kb on - strand, within ABZR87_RS21325at 1166.571 kb on - strand, within ABZR87_RS21325at 1166.571 kb on - strand, within ABZR87_RS21325at 1166.684 kb on + strandat 1166.684 kb on + strandat 1166.684 kb on + strandat 1166.749 kb on + strandat 1166.749 kb on + strandat 1166.749 kb on + strandat 1166.750 kb on - strandat 1167.070 kb on + strand, within ABZR87_RS21330at 1167.070 kb on + strand, within ABZR87_RS21330at 1167.071 kb on - strand, within ABZR87_RS21330at 1167.071 kb on - strand, within ABZR87_RS21330at 1167.071 kb on - strand, within ABZR87_RS21330at 1167.302 kb on + strand, within ABZR87_RS21330at 1167.303 kb on - strand, within ABZR87_RS21330at 1167.303 kb on - strand, within ABZR87_RS21330at 1167.406 kb on + strand, within ABZR87_RS21330at 1167.406 kb on + strand, within ABZR87_RS21330at 1167.512 kb on + strand, within ABZR87_RS21330at 1167.581 kb on + strand, within ABZR87_RS21330at 1167.582 kb on - strand, within ABZR87_RS21330at 1167.735 kb on + strandat 1167.735 kb on + strandat 1167.735 kb on + strandat 1167.735 kb on + strandat 1167.735 kb on + strandat 1167.735 kb on + strandat 1167.736 kb on - strandat 1167.736 kb on - strandat 1167.736 kb on - strandat 1167.746 kb on - strandat 1167.826 kb on + strandat 1167.826 kb on + strandat 1167.904 kb on + strandat 1167.904 kb on + strandat 1167.904 kb on + strandat 1167.904 kb on + strandat 1167.904 kb on + strandat 1167.905 kb on - strandat 1167.905 kb on - strandat 1167.905 kb on - strandat 1167.940 kb on + strand, within ABZR87_RS21335at 1167.940 kb on + strand, within ABZR87_RS21335at 1167.940 kb on + strand, within ABZR87_RS21335at 1167.940 kb on + strand, within ABZR87_RS21335at 1167.940 kb on + strand, within ABZR87_RS21335at 1167.940 kb on + strand, within ABZR87_RS21335at 1167.940 kb on + strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.941 kb on - strand, within ABZR87_RS21335at 1167.987 kb on + strand, within ABZR87_RS21335at 1167.987 kb on + strand, within ABZR87_RS21335at 1167.988 kb on - strand, within ABZR87_RS21335at 1167.988 kb on - strand, within ABZR87_RS21335at 1167.988 kb on - strand, within ABZR87_RS21335at 1168.109 kb on + strand, within ABZR87_RS21335at 1168.109 kb on + strand, within ABZR87_RS21335at 1168.138 kb on + strand, within ABZR87_RS21335at 1168.139 kb on - strand, within ABZR87_RS21335at 1168.207 kb on + strand, within ABZR87_RS21335at 1168.208 kb on - strand, within ABZR87_RS21335at 1168.208 kb on - strand, within ABZR87_RS21335at 1168.520 kb on - strand, within ABZR87_RS21335

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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1,165,783 - ABZR87_RS21320 0.75 -0.5
1,165,821 + ABZR87_RS21320 0.78 +1.0
1,165,821 + ABZR87_RS21320 0.78 +0.5
1,165,822 - ABZR87_RS21320 0.78 -0.0
1,165,822 - ABZR87_RS21320 0.78 -2.6
1,165,932 + ABZR87_RS21320 0.88 -2.2
1,165,932 + ABZR87_RS21320 0.88 +0.4
1,165,932 + ABZR87_RS21320 0.88 -0.8
1,165,932 + ABZR87_RS21320 0.88 +0.4
1,165,932 + ABZR87_RS21320 0.88 -0.2
1,165,932 + ABZR87_RS21320 0.88 +1.0
1,165,932 + ABZR87_RS21320 0.88 +0.8
1,165,932 + ABZR87_RS21320 0.88 +2.0
1,165,932 + ABZR87_RS21320 0.88 -3.8
1,165,932 + ABZR87_RS21320 0.88 +0.4
1,165,932 + ABZR87_RS21320 0.88 -0.3
1,165,933 - ABZR87_RS21320 0.88 -0.2
1,165,933 - ABZR87_RS21320 0.88 +0.8
1,165,933 - ABZR87_RS21320 0.88 +1.6
1,165,933 - ABZR87_RS21320 0.88 -2.1
1,165,933 - ABZR87_RS21320 0.88 -2.7
1,165,933 - ABZR87_RS21320 0.88 +1.2
1,165,977 + +0.9
1,166,111 + +1.0
1,166,111 + -2.1
1,166,112 - -1.7
1,166,134 - +1.6
1,166,296 + ABZR87_RS21325 0.24 +0.3
1,166,321 + ABZR87_RS21325 0.29 -0.3
1,166,321 + ABZR87_RS21325 0.29 -1.0
1,166,321 + ABZR87_RS21325 0.29 +0.6
1,166,322 - ABZR87_RS21325 0.29 -1.5
1,166,322 - ABZR87_RS21325 0.29 -2.2
1,166,322 - ABZR87_RS21325 0.29 -2.2
1,166,322 - ABZR87_RS21325 0.29 -0.1
1,166,354 + ABZR87_RS21325 0.35 +0.4
1,166,384 + ABZR87_RS21325 0.41 -3.0
1,166,384 + ABZR87_RS21325 0.41 +1.4
1,166,384 + ABZR87_RS21325 0.41 -0.7
1,166,385 - ABZR87_RS21325 0.41 +0.7
1,166,385 - ABZR87_RS21325 0.41 +1.4
1,166,453 + ABZR87_RS21325 0.54 -2.3
1,166,453 + ABZR87_RS21325 0.54 -0.2
1,166,453 + ABZR87_RS21325 0.54 -0.5
1,166,454 - ABZR87_RS21325 0.55 -3.3
1,166,528 + ABZR87_RS21325 0.69 +1.3
1,166,529 - ABZR87_RS21325 0.69 +0.6
1,166,561 + ABZR87_RS21325 0.75 -0.1
1,166,570 + ABZR87_RS21325 0.77 -3.2
1,166,570 + ABZR87_RS21325 0.77 -0.5
1,166,570 + ABZR87_RS21325 0.77 -1.9
1,166,570 + ABZR87_RS21325 0.77 -2.3
1,166,570 + ABZR87_RS21325 0.77 -0.2
1,166,570 + ABZR87_RS21325 0.77 +0.2
1,166,570 + ABZR87_RS21325 0.77 +1.9
1,166,571 - ABZR87_RS21325 0.77 +0.0
1,166,571 - ABZR87_RS21325 0.77 -2.4
1,166,571 - ABZR87_RS21325 0.77 -0.2
1,166,571 - ABZR87_RS21325 0.77 +1.0
1,166,571 - ABZR87_RS21325 0.77 +1.3
1,166,571 - ABZR87_RS21325 0.77 +0.8
1,166,571 - ABZR87_RS21325 0.77 -0.2
1,166,684 + -4.0
1,166,684 + -0.1
1,166,684 + -0.1
1,166,749 + -0.4
1,166,749 + -2.4
1,166,749 + +0.9
1,166,750 - -2.9
1,167,070 + ABZR87_RS21330 0.33 +0.9
1,167,070 + ABZR87_RS21330 0.33 +0.6
1,167,071 - ABZR87_RS21330 0.33 +0.4
1,167,071 - ABZR87_RS21330 0.33 +0.2
1,167,071 - ABZR87_RS21330 0.33 -2.5
1,167,302 + ABZR87_RS21330 0.57 -3.2
1,167,303 - ABZR87_RS21330 0.58 -0.2
1,167,303 - ABZR87_RS21330 0.58 +2.4
1,167,406 + ABZR87_RS21330 0.68 -2.3
1,167,406 + ABZR87_RS21330 0.68 +0.8
1,167,512 + ABZR87_RS21330 0.79 +0.3
1,167,581 + ABZR87_RS21330 0.87 -1.6
1,167,582 - ABZR87_RS21330 0.87 -0.1
1,167,735 + +0.0
1,167,735 + -0.1
1,167,735 + +1.9
1,167,735 + +0.7
1,167,735 + +1.1
1,167,735 + -0.0
1,167,736 - -0.6
1,167,736 - -0.1
1,167,736 - -0.3
1,167,746 - +0.5
1,167,826 + -2.7
1,167,826 + -0.6
1,167,904 + -0.2
1,167,904 + -1.9
1,167,904 + -2.2
1,167,904 + -0.5
1,167,904 + +0.3
1,167,905 - +1.4
1,167,905 - -0.3
1,167,905 - +1.7
1,167,940 + ABZR87_RS21335 0.13 -1.1
1,167,940 + ABZR87_RS21335 0.13 +0.7
1,167,940 + ABZR87_RS21335 0.13 +0.0
1,167,940 + ABZR87_RS21335 0.13 -0.7
1,167,940 + ABZR87_RS21335 0.13 -0.7
1,167,940 + ABZR87_RS21335 0.13 +0.9
1,167,940 + ABZR87_RS21335 0.13 -0.7
1,167,941 - ABZR87_RS21335 0.13 +2.3
1,167,941 - ABZR87_RS21335 0.13 +0.6
1,167,941 - ABZR87_RS21335 0.13 +1.7
1,167,941 - ABZR87_RS21335 0.13 -0.6
1,167,941 - ABZR87_RS21335 0.13 +1.4
1,167,941 - ABZR87_RS21335 0.13 +0.8
1,167,941 - ABZR87_RS21335 0.13 -2.4
1,167,941 - ABZR87_RS21335 0.13 +0.9
1,167,987 + ABZR87_RS21335 0.18 +1.3
1,167,987 + ABZR87_RS21335 0.18 +0.1
1,167,988 - ABZR87_RS21335 0.18 -1.9
1,167,988 - ABZR87_RS21335 0.18 -1.1
1,167,988 - ABZR87_RS21335 0.18 -2.8
1,168,109 + ABZR87_RS21335 0.31 +1.6
1,168,109 + ABZR87_RS21335 0.31 +1.2
1,168,138 + ABZR87_RS21335 0.35 -2.7
1,168,139 - ABZR87_RS21335 0.35 +0.9
1,168,207 + ABZR87_RS21335 0.42 -0.5
1,168,208 - ABZR87_RS21335 0.42 +0.8
1,168,208 - ABZR87_RS21335 0.42 +0.5
1,168,520 - ABZR87_RS21335 0.77 -0.2

Or see this region's nucleotide sequence