Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20485 and ABZR87_RS20490 are separated by 167 nucleotides ABZR87_RS20490 and ABZR87_RS20495 are separated by 169 nucleotides ABZR87_RS20495 and ABZR87_RS20500 are separated by 278 nucleotides
ABZR87_RS20485: ABZR87_RS20485 - membrane protein, at 983,871 to 985,574
_RS20485
ABZR87_RS20490: ABZR87_RS20490 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 985,742 to 988,327
_RS20490
ABZR87_RS20495: ABZR87_RS20495 - hypothetical protein, at 988,497 to 989,012
_RS20495
ABZR87_RS20500: ABZR87_RS20500 - hypothetical protein, at 989,291 to 989,533
_RS20500
Position (kb) 985
986
987
988
989 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 984.768 kb on + strand, within ABZR87_RS20485 at 984.769 kb on - strand, within ABZR87_RS20485 at 984.850 kb on - strand, within ABZR87_RS20485 at 984.870 kb on + strand, within ABZR87_RS20485 at 984.870 kb on + strand, within ABZR87_RS20485 at 984.870 kb on + strand, within ABZR87_RS20485 at 984.871 kb on - strand, within ABZR87_RS20485 at 984.871 kb on - strand, within ABZR87_RS20485 at 984.871 kb on - strand, within ABZR87_RS20485 at 984.945 kb on + strand, within ABZR87_RS20485 at 984.945 kb on + strand, within ABZR87_RS20485 at 984.946 kb on - strand, within ABZR87_RS20485 at 984.946 kb on - strand, within ABZR87_RS20485 at 984.946 kb on - strand, within ABZR87_RS20485 at 984.946 kb on - strand, within ABZR87_RS20485 at 984.958 kb on + strand, within ABZR87_RS20485 at 984.959 kb on - strand, within ABZR87_RS20485 at 984.975 kb on + strand, within ABZR87_RS20485 at 984.975 kb on + strand, within ABZR87_RS20485 at 984.975 kb on + strand, within ABZR87_RS20485 at 984.975 kb on + strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.976 kb on - strand, within ABZR87_RS20485 at 984.981 kb on + strand, within ABZR87_RS20485 at 984.981 kb on + strand, within ABZR87_RS20485 at 984.981 kb on + strand, within ABZR87_RS20485 at 984.981 kb on + strand, within ABZR87_RS20485 at 984.981 kb on + strand, within ABZR87_RS20485 at 984.981 kb on + strand, within ABZR87_RS20485 at 984.982 kb on - strand, within ABZR87_RS20485 at 984.982 kb on - strand, within ABZR87_RS20485 at 984.982 kb on - strand, within ABZR87_RS20485 at 984.982 kb on - strand, within ABZR87_RS20485 at 984.982 kb on - strand, within ABZR87_RS20485 at 985.101 kb on + strand, within ABZR87_RS20485 at 985.102 kb on - strand, within ABZR87_RS20485 at 985.209 kb on + strand, within ABZR87_RS20485 at 985.209 kb on + strand, within ABZR87_RS20485 at 985.213 kb on - strand, within ABZR87_RS20485 at 985.372 kb on - strand, within ABZR87_RS20485 at 985.425 kb on + strand at 985.425 kb on + strand at 985.425 kb on - strand at 985.426 kb on - strand at 985.426 kb on - strand at 985.426 kb on - strand at 985.518 kb on + strand at 985.519 kb on - strand at 985.519 kb on - strand at 985.546 kb on - strand at 985.743 kb on + strand at 985.743 kb on + strand at 985.743 kb on + strand at 985.744 kb on - strand at 985.744 kb on - strand at 985.744 kb on - strand at 985.744 kb on - strand at 985.800 kb on + strand at 985.800 kb on + strand at 985.800 kb on + strand at 985.800 kb on + strand at 985.801 kb on - strand at 985.801 kb on - strand at 985.801 kb on - strand at 985.804 kb on + strand at 985.851 kb on + strand at 985.851 kb on + strand at 985.852 kb on - strand at 985.917 kb on + strand at 985.918 kb on - strand at 985.954 kb on + strand at 985.954 kb on + strand at 986.038 kb on + strand, within ABZR87_RS20490 at 986.039 kb on - strand, within ABZR87_RS20490 at 986.067 kb on + strand, within ABZR87_RS20490 at 986.068 kb on - strand, within ABZR87_RS20490 at 986.329 kb on - strand, within ABZR87_RS20490 at 986.469 kb on + strand, within ABZR87_RS20490 at 986.469 kb on + strand, within ABZR87_RS20490 at 986.469 kb on + strand, within ABZR87_RS20490 at 986.658 kb on + strand, within ABZR87_RS20490 at 986.659 kb on - strand, within ABZR87_RS20490 at 986.659 kb on - strand, within ABZR87_RS20490 at 987.117 kb on + strand, within ABZR87_RS20490 at 987.118 kb on - strand, within ABZR87_RS20490 at 987.118 kb on - strand, within ABZR87_RS20490 at 987.481 kb on - strand, within ABZR87_RS20490 at 987.481 kb on - strand, within ABZR87_RS20490 at 987.625 kb on - strand, within ABZR87_RS20490 at 988.038 kb on + strand, within ABZR87_RS20490 at 988.039 kb on - strand, within ABZR87_RS20490 at 988.314 kb on + strand at 988.315 kb on - strand at 988.350 kb on + strand at 988.409 kb on + strand at 988.491 kb on + strand at 988.491 kb on + strand at 988.521 kb on + strand at 988.521 kb on + strand at 988.521 kb on + strand at 988.521 kb on + strand at 988.522 kb on - strand at 988.522 kb on - strand at 988.522 kb on - strand at 988.716 kb on - strand, within ABZR87_RS20495 at 989.051 kb on + strand at 989.051 kb on + strand at 989.051 kb on + strand at 989.052 kb on - strand at 989.052 kb on - strand at 989.101 kb on + strand at 989.101 kb on + strand at 989.134 kb on + strand at 989.134 kb on + strand at 989.134 kb on + strand at 989.165 kb on + strand at 989.165 kb on + strand at 989.166 kb on - strand at 989.166 kb on - strand at 989.166 kb on - strand at 989.203 kb on + strand at 989.204 kb on - strand at 989.210 kb on + strand at 989.210 kb on + strand at 989.211 kb on - strand at 989.250 kb on - strand at 989.287 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 984,768 + ABZR87_RS20485 0.53 +0.1 984,769 - ABZR87_RS20485 0.53 -0.1 984,850 - ABZR87_RS20485 0.57 -2.1 984,870 + ABZR87_RS20485 0.59 -4.7 984,870 + ABZR87_RS20485 0.59 +0.4 984,870 + ABZR87_RS20485 0.59 -3.0 984,871 - ABZR87_RS20485 0.59 -3.9 984,871 - ABZR87_RS20485 0.59 +1.0 984,871 - ABZR87_RS20485 0.59 +0.9 984,945 + ABZR87_RS20485 0.63 +0.4 984,945 + ABZR87_RS20485 0.63 -1.8 984,946 - ABZR87_RS20485 0.63 +0.0 984,946 - ABZR87_RS20485 0.63 +1.9 984,946 - ABZR87_RS20485 0.63 -0.3 984,946 - ABZR87_RS20485 0.63 +0.1 984,958 + ABZR87_RS20485 0.64 -0.1 984,959 - ABZR87_RS20485 0.64 -2.0 984,975 + ABZR87_RS20485 0.65 +0.6 984,975 + ABZR87_RS20485 0.65 -2.9 984,975 + ABZR87_RS20485 0.65 +1.6 984,975 + ABZR87_RS20485 0.65 -2.2 984,976 - ABZR87_RS20485 0.65 +0.7 984,976 - ABZR87_RS20485 0.65 +1.5 984,976 - ABZR87_RS20485 0.65 -0.4 984,976 - ABZR87_RS20485 0.65 -0.7 984,976 - ABZR87_RS20485 0.65 -0.9 984,976 - ABZR87_RS20485 0.65 -2.4 984,976 - ABZR87_RS20485 0.65 -4.5 984,976 - ABZR87_RS20485 0.65 +1.2 984,981 + ABZR87_RS20485 0.65 +0.6 984,981 + ABZR87_RS20485 0.65 +0.1 984,981 + ABZR87_RS20485 0.65 -0.2 984,981 + ABZR87_RS20485 0.65 +0.5 984,981 + ABZR87_RS20485 0.65 +3.4 984,981 + ABZR87_RS20485 0.65 +0.3 984,982 - ABZR87_RS20485 0.65 +0.4 984,982 - ABZR87_RS20485 0.65 +0.6 984,982 - ABZR87_RS20485 0.65 -0.4 984,982 - ABZR87_RS20485 0.65 +0.7 984,982 - ABZR87_RS20485 0.65 -0.3 985,101 + ABZR87_RS20485 0.72 -0.9 985,102 - ABZR87_RS20485 0.72 -1.2 985,209 + ABZR87_RS20485 0.79 +0.4 985,209 + ABZR87_RS20485 0.79 +0.9 985,213 - ABZR87_RS20485 0.79 +1.9 985,372 - ABZR87_RS20485 0.88 +1.1 985,425 + +1.5 985,425 + +0.4 985,425 - +0.2 985,426 - -0.1 985,426 - -1.2 985,426 - +1.7 985,518 + -1.2 985,519 - +0.7 985,519 - -0.2 985,546 - -1.5 985,743 + -0.2 985,743 + -0.3 985,743 + +0.1 985,744 - -1.4 985,744 - -0.4 985,744 - +0.1 985,744 - +0.1 985,800 + +0.5 985,800 + -1.7 985,800 + -1.3 985,800 + -3.2 985,801 - -0.2 985,801 - +1.4 985,801 - -2.4 985,804 + -0.4 985,851 + -3.9 985,851 + +1.3 985,852 - -2.0 985,917 + -1.0 985,918 - -1.3 985,954 + -3.9 985,954 + -2.4 986,038 + ABZR87_RS20490 0.11 -0.0 986,039 - ABZR87_RS20490 0.11 +1.0 986,067 + ABZR87_RS20490 0.13 -2.9 986,068 - ABZR87_RS20490 0.13 -0.9 986,329 - ABZR87_RS20490 0.23 -1.7 986,469 + ABZR87_RS20490 0.28 +0.9 986,469 + ABZR87_RS20490 0.28 -3.6 986,469 + ABZR87_RS20490 0.28 +0.7 986,658 + ABZR87_RS20490 0.35 -2.9 986,659 - ABZR87_RS20490 0.35 -0.9 986,659 - ABZR87_RS20490 0.35 -2.9 987,117 + ABZR87_RS20490 0.53 +0.7 987,118 - ABZR87_RS20490 0.53 +1.1 987,118 - ABZR87_RS20490 0.53 -0.6 987,481 - ABZR87_RS20490 0.67 -0.7 987,481 - ABZR87_RS20490 0.67 -1.4 987,625 - ABZR87_RS20490 0.73 -0.7 988,038 + ABZR87_RS20490 0.89 -0.8 988,039 - ABZR87_RS20490 0.89 -1.4 988,314 + +0.4 988,315 - +0.2 988,350 + +1.0 988,409 + +0.5 988,491 + +1.1 988,491 + +1.8 988,521 + +1.2 988,521 + -0.1 988,521 + +1.2 988,521 + +0.5 988,522 - +2.0 988,522 - -1.2 988,522 - +1.5 988,716 - ABZR87_RS20495 0.42 +0.7 989,051 + +0.1 989,051 + -0.2 989,051 + -2.8 989,052 - +1.2 989,052 - +0.3 989,101 + +1.0 989,101 + +1.2 989,134 + +0.3 989,134 + +1.4 989,134 + +0.7 989,165 + -1.2 989,165 + +0.6 989,166 - +2.0 989,166 - -1.6 989,166 - +0.3 989,203 + -3.4 989,204 - -0.0 989,210 + +0.0 989,210 + -1.1 989,211 - -0.8 989,250 - -1.7 989,287 - +0.2
Or see this region's nucleotide sequence