Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19990

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19980 and ABZR87_RS19985 are separated by 29 nucleotidesABZR87_RS19985 and ABZR87_RS19990 overlap by 4 nucleotidesABZR87_RS19990 and ABZR87_RS19995 are separated by 17 nucleotidesABZR87_RS19995 and ABZR87_RS20000 are separated by 235 nucleotides ABZR87_RS19980: ABZR87_RS19980 - DUF1488 domain-containing protein, at 861,414 to 861,692 _RS19980 ABZR87_RS19985: ABZR87_RS19985 - ribose-phosphate pyrophosphokinase, at 861,722 to 862,663 _RS19985 ABZR87_RS19990: ABZR87_RS19990 - MBL fold metallo-hydrolase, at 862,660 to 864,024 _RS19990 ABZR87_RS19995: ABZR87_RS19995 - Hsp20/alpha crystallin family protein, at 864,042 to 864,464 _RS19995 ABZR87_RS20000: ABZR87_RS20000 - bifunctional aminoglycoside phosphotransferase/ATP-binding protein, at 864,700 to 866,247 _RS20000 Position (kb) 862 863 864 865Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 861.707 kb on - strandat 861.707 kb on - strandat 861.707 kb on - strandat 861.756 kb on - strandat 861.756 kb on - strandat 861.873 kb on + strand, within ABZR87_RS19985at 861.873 kb on + strand, within ABZR87_RS19985at 861.873 kb on + strand, within ABZR87_RS19985at 861.874 kb on - strand, within ABZR87_RS19985at 861.906 kb on - strand, within ABZR87_RS19985at 861.906 kb on - strand, within ABZR87_RS19985at 862.001 kb on + strand, within ABZR87_RS19985at 862.001 kb on + strand, within ABZR87_RS19985at 862.001 kb on + strand, within ABZR87_RS19985at 862.002 kb on - strand, within ABZR87_RS19985at 862.002 kb on - strand, within ABZR87_RS19985at 862.002 kb on - strand, within ABZR87_RS19985at 862.005 kb on + strand, within ABZR87_RS19985at 862.005 kb on + strand, within ABZR87_RS19985at 862.005 kb on + strand, within ABZR87_RS19985at 862.005 kb on + strand, within ABZR87_RS19985at 862.005 kb on + strand, within ABZR87_RS19985at 862.006 kb on - strand, within ABZR87_RS19985at 862.006 kb on - strand, within ABZR87_RS19985at 862.033 kb on + strand, within ABZR87_RS19985at 862.033 kb on + strand, within ABZR87_RS19985at 862.034 kb on - strand, within ABZR87_RS19985at 862.034 kb on - strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.160 kb on + strand, within ABZR87_RS19985at 862.161 kb on - strand, within ABZR87_RS19985at 862.161 kb on - strand, within ABZR87_RS19985at 862.224 kb on + strand, within ABZR87_RS19985at 862.224 kb on + strand, within ABZR87_RS19985at 862.224 kb on + strand, within ABZR87_RS19985at 862.360 kb on + strand, within ABZR87_RS19985at 862.360 kb on + strand, within ABZR87_RS19985at 862.360 kb on + strand, within ABZR87_RS19985at 862.360 kb on + strand, within ABZR87_RS19985at 862.360 kb on + strand, within ABZR87_RS19985at 862.361 kb on - strand, within ABZR87_RS19985at 862.361 kb on - strand, within ABZR87_RS19985at 862.361 kb on - strand, within ABZR87_RS19985at 862.361 kb on - strand, within ABZR87_RS19985at 862.361 kb on - strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.362 kb on + strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.363 kb on - strand, within ABZR87_RS19985at 862.372 kb on - strand, within ABZR87_RS19985at 862.506 kb on + strand, within ABZR87_RS19985at 862.506 kb on + strand, within ABZR87_RS19985at 862.507 kb on - strand, within ABZR87_RS19985at 862.507 kb on - strand, within ABZR87_RS19985at 862.518 kb on + strand, within ABZR87_RS19985at 862.518 kb on + strand, within ABZR87_RS19985at 862.519 kb on - strand, within ABZR87_RS19985at 862.519 kb on - strand, within ABZR87_RS19985at 862.679 kb on + strandat 862.679 kb on + strandat 862.692 kb on - strandat 862.692 kb on - strandat 862.800 kb on + strand, within ABZR87_RS19990at 863.154 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.219 kb on + strand, within ABZR87_RS19990at 863.220 kb on - strand, within ABZR87_RS19990at 863.261 kb on + strand, within ABZR87_RS19990at 863.261 kb on + strand, within ABZR87_RS19990at 863.261 kb on + strand, within ABZR87_RS19990at 863.261 kb on + strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.262 kb on - strand, within ABZR87_RS19990at 863.270 kb on + strand, within ABZR87_RS19990at 863.270 kb on + strand, within ABZR87_RS19990at 863.286 kb on + strand, within ABZR87_RS19990at 863.287 kb on - strand, within ABZR87_RS19990at 863.399 kb on + strand, within ABZR87_RS19990at 863.399 kb on + strand, within ABZR87_RS19990at 863.399 kb on + strand, within ABZR87_RS19990at 863.399 kb on + strand, within ABZR87_RS19990at 863.400 kb on - strand, within ABZR87_RS19990at 863.400 kb on - strand, within ABZR87_RS19990at 863.601 kb on - strand, within ABZR87_RS19990at 863.623 kb on + strand, within ABZR87_RS19990at 863.624 kb on - strand, within ABZR87_RS19990at 863.624 kb on - strand, within ABZR87_RS19990at 863.652 kb on - strand, within ABZR87_RS19990at 863.699 kb on + strand, within ABZR87_RS19990at 863.700 kb on - strand, within ABZR87_RS19990at 863.700 kb on - strand, within ABZR87_RS19990at 863.778 kb on - strand, within ABZR87_RS19990at 863.778 kb on - strand, within ABZR87_RS19990at 863.778 kb on - strand, within ABZR87_RS19990at 863.835 kb on + strand, within ABZR87_RS19990at 863.851 kb on + strand, within ABZR87_RS19990at 863.851 kb on + strand, within ABZR87_RS19990at 863.852 kb on - strand, within ABZR87_RS19990at 863.852 kb on - strand, within ABZR87_RS19990at 863.919 kb on - strandat 863.919 kb on - strandat 863.919 kb on - strandat 863.975 kb on + strandat 863.975 kb on + strandat 863.976 kb on - strandat 863.976 kb on - strandat 863.976 kb on - strandat 864.115 kb on + strand, within ABZR87_RS19995at 864.115 kb on + strand, within ABZR87_RS19995at 864.115 kb on + strand, within ABZR87_RS19995at 864.115 kb on + strand, within ABZR87_RS19995at 864.184 kb on + strand, within ABZR87_RS19995at 864.325 kb on + strand, within ABZR87_RS19995at 864.326 kb on - strand, within ABZR87_RS19995at 864.445 kb on + strandat 864.446 kb on - strandat 864.446 kb on - strandat 864.446 kb on - strandat 864.493 kb on - strandat 864.493 kb on - strandat 864.634 kb on + strandat 864.634 kb on + strandat 864.635 kb on - strandat 864.665 kb on + strandat 864.666 kb on - strandat 864.666 kb on - strandat 864.699 kb on + strandat 864.700 kb on - strandat 864.717 kb on + strandat 864.718 kb on - strandat 864.718 kb on - strandat 864.718 kb on - strandat 864.853 kb on + strandat 864.853 kb on + strandat 864.853 kb on + strandat 864.854 kb on - strandat 864.965 kb on + strand, within ABZR87_RS20000at 864.965 kb on + strand, within ABZR87_RS20000at 864.966 kb on - strand, within ABZR87_RS20000at 864.966 kb on - strand, within ABZR87_RS20000at 864.966 kb on - strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.967 kb on + strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000at 864.968 kb on - strand, within ABZR87_RS20000

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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861,707 - +0.2
861,707 - -0.9
861,707 - -2.6
861,756 - -0.7
861,756 - -0.6
861,873 + ABZR87_RS19985 0.16 +1.3
861,873 + ABZR87_RS19985 0.16 -0.4
861,873 + ABZR87_RS19985 0.16 +0.8
861,874 - ABZR87_RS19985 0.16 +0.1
861,906 - ABZR87_RS19985 0.20 -2.9
861,906 - ABZR87_RS19985 0.20 +1.0
862,001 + ABZR87_RS19985 0.30 +0.9
862,001 + ABZR87_RS19985 0.30 -0.0
862,001 + ABZR87_RS19985 0.30 +0.5
862,002 - ABZR87_RS19985 0.30 -0.6
862,002 - ABZR87_RS19985 0.30 +0.7
862,002 - ABZR87_RS19985 0.30 -0.4
862,005 + ABZR87_RS19985 0.30 -0.5
862,005 + ABZR87_RS19985 0.30 -0.9
862,005 + ABZR87_RS19985 0.30 +0.0
862,005 + ABZR87_RS19985 0.30 +1.1
862,005 + ABZR87_RS19985 0.30 +0.6
862,006 - ABZR87_RS19985 0.30 +1.7
862,006 - ABZR87_RS19985 0.30 +0.4
862,033 + ABZR87_RS19985 0.33 +2.0
862,033 + ABZR87_RS19985 0.33 -1.1
862,034 - ABZR87_RS19985 0.33 -0.1
862,034 - ABZR87_RS19985 0.33 +0.3
862,160 + ABZR87_RS19985 0.46 -0.1
862,160 + ABZR87_RS19985 0.46 +1.2
862,160 + ABZR87_RS19985 0.46 -2.2
862,160 + ABZR87_RS19985 0.46 +1.4
862,160 + ABZR87_RS19985 0.46 +1.4
862,160 + ABZR87_RS19985 0.46 -2.1
862,160 + ABZR87_RS19985 0.46 -1.9
862,161 - ABZR87_RS19985 0.47 -1.2
862,161 - ABZR87_RS19985 0.47 +0.5
862,224 + ABZR87_RS19985 0.53 +1.2
862,224 + ABZR87_RS19985 0.53 -1.4
862,224 + ABZR87_RS19985 0.53 -0.2
862,360 + ABZR87_RS19985 0.68 +0.7
862,360 + ABZR87_RS19985 0.68 +0.4
862,360 + ABZR87_RS19985 0.68 +0.3
862,360 + ABZR87_RS19985 0.68 -0.1
862,360 + ABZR87_RS19985 0.68 +3.1
862,361 - ABZR87_RS19985 0.68 +1.5
862,361 - ABZR87_RS19985 0.68 -0.2
862,361 - ABZR87_RS19985 0.68 +0.6
862,361 - ABZR87_RS19985 0.68 +1.8
862,361 - ABZR87_RS19985 0.68 -1.2
862,362 + ABZR87_RS19985 0.68 +0.4
862,362 + ABZR87_RS19985 0.68 -1.2
862,362 + ABZR87_RS19985 0.68 +1.0
862,362 + ABZR87_RS19985 0.68 +0.7
862,362 + ABZR87_RS19985 0.68 +0.3
862,362 + ABZR87_RS19985 0.68 -4.0
862,362 + ABZR87_RS19985 0.68 +0.3
862,363 - ABZR87_RS19985 0.68 -3.1
862,363 - ABZR87_RS19985 0.68 +2.5
862,363 - ABZR87_RS19985 0.68 -3.9
862,363 - ABZR87_RS19985 0.68 +1.0
862,363 - ABZR87_RS19985 0.68 -0.2
862,363 - ABZR87_RS19985 0.68 +1.2
862,363 - ABZR87_RS19985 0.68 -1.9
862,372 - ABZR87_RS19985 0.69 -1.0
862,506 + ABZR87_RS19985 0.83 -0.3
862,506 + ABZR87_RS19985 0.83 +0.7
862,507 - ABZR87_RS19985 0.83 +2.2
862,507 - ABZR87_RS19985 0.83 +0.1
862,518 + ABZR87_RS19985 0.85 -0.5
862,518 + ABZR87_RS19985 0.85 -0.2
862,519 - ABZR87_RS19985 0.85 +0.3
862,519 - ABZR87_RS19985 0.85 -4.2
862,679 + -1.9
862,679 + -0.2
862,692 - -0.9
862,692 - +1.6
862,800 + ABZR87_RS19990 0.10 +1.4
863,154 + ABZR87_RS19990 0.36 -3.4
863,219 + ABZR87_RS19990 0.41 +1.7
863,219 + ABZR87_RS19990 0.41 -0.1
863,219 + ABZR87_RS19990 0.41 +0.7
863,219 + ABZR87_RS19990 0.41 -2.9
863,219 + ABZR87_RS19990 0.41 +1.9
863,220 - ABZR87_RS19990 0.41 -2.1
863,261 + ABZR87_RS19990 0.44 -4.0
863,261 + ABZR87_RS19990 0.44 -2.2
863,261 + ABZR87_RS19990 0.44 -0.9
863,261 + ABZR87_RS19990 0.44 -0.3
863,262 - ABZR87_RS19990 0.44 -2.9
863,262 - ABZR87_RS19990 0.44 -0.0
863,262 - ABZR87_RS19990 0.44 +0.3
863,262 - ABZR87_RS19990 0.44 -0.9
863,262 - ABZR87_RS19990 0.44 -3.6
863,270 + ABZR87_RS19990 0.45 -0.1
863,270 + ABZR87_RS19990 0.45 -0.9
863,286 + ABZR87_RS19990 0.46 +1.4
863,287 - ABZR87_RS19990 0.46 +0.5
863,399 + ABZR87_RS19990 0.54 +0.7
863,399 + ABZR87_RS19990 0.54 -1.9
863,399 + ABZR87_RS19990 0.54 +0.1
863,399 + ABZR87_RS19990 0.54 +1.1
863,400 - ABZR87_RS19990 0.54 -0.7
863,400 - ABZR87_RS19990 0.54 -0.4
863,601 - ABZR87_RS19990 0.69 +0.5
863,623 + ABZR87_RS19990 0.71 +0.2
863,624 - ABZR87_RS19990 0.71 +1.3
863,624 - ABZR87_RS19990 0.71 +1.2
863,652 - ABZR87_RS19990 0.73 +0.8
863,699 + ABZR87_RS19990 0.76 +0.1
863,700 - ABZR87_RS19990 0.76 -2.9
863,700 - ABZR87_RS19990 0.76 +1.9
863,778 - ABZR87_RS19990 0.82 -0.0
863,778 - ABZR87_RS19990 0.82 +0.1
863,778 - ABZR87_RS19990 0.82 +0.6
863,835 + ABZR87_RS19990 0.86 -0.0
863,851 + ABZR87_RS19990 0.87 +1.3
863,851 + ABZR87_RS19990 0.87 -0.3
863,852 - ABZR87_RS19990 0.87 +0.2
863,852 - ABZR87_RS19990 0.87 +1.4
863,919 - +1.2
863,919 - +2.5
863,919 - -0.1
863,975 + +0.5
863,975 + -1.5
863,976 - +1.2
863,976 - -2.1
863,976 - +0.7
864,115 + ABZR87_RS19995 0.17 -0.7
864,115 + ABZR87_RS19995 0.17 -1.2
864,115 + ABZR87_RS19995 0.17 -0.3
864,115 + ABZR87_RS19995 0.17 -0.7
864,184 + ABZR87_RS19995 0.34 +0.3
864,325 + ABZR87_RS19995 0.67 +1.0
864,326 - ABZR87_RS19995 0.67 -3.2
864,445 + -1.5
864,446 - -2.1
864,446 - -0.4
864,446 - -0.4
864,493 - -1.5
864,493 - +0.6
864,634 + +1.2
864,634 + +0.6
864,635 - -0.2
864,665 + +0.3
864,666 - +2.2
864,666 - -1.2
864,699 + -1.7
864,700 - +0.7
864,717 + +0.7
864,718 - +0.9
864,718 - +0.1
864,718 - -0.2
864,853 + +0.9
864,853 + +0.4
864,853 + -1.5
864,854 - +0.3
864,965 + ABZR87_RS20000 0.17 -0.1
864,965 + ABZR87_RS20000 0.17 -0.7
864,966 - ABZR87_RS20000 0.17 -0.1
864,966 - ABZR87_RS20000 0.17 -2.0
864,966 - ABZR87_RS20000 0.17 +0.3
864,967 + ABZR87_RS20000 0.17 -2.4
864,967 + ABZR87_RS20000 0.17 -1.2
864,967 + ABZR87_RS20000 0.17 +0.8
864,967 + ABZR87_RS20000 0.17 +0.4
864,967 + ABZR87_RS20000 0.17 +0.9
864,967 + ABZR87_RS20000 0.17 +2.2
864,967 + ABZR87_RS20000 0.17 +1.0
864,968 - ABZR87_RS20000 0.17 -0.1
864,968 - ABZR87_RS20000 0.17 +0.4
864,968 - ABZR87_RS20000 0.17 +0.1
864,968 - ABZR87_RS20000 0.17 +0.3
864,968 - ABZR87_RS20000 0.17 -0.7

Or see this region's nucleotide sequence