Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19780

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19775 and ABZR87_RS19780 are separated by 140 nucleotidesABZR87_RS19780 and ABZR87_RS19785 are separated by 11 nucleotides ABZR87_RS19775: ABZR87_RS19775 - DMT family transporter, at 809,345 to 810,247 _RS19775 ABZR87_RS19780: ABZR87_RS19780 - Lrp/AsnC family transcriptional regulator, at 810,388 to 810,834 _RS19780 ABZR87_RS19785: ABZR87_RS19785 - cystathionine beta-lyase, at 810,846 to 812,024 _RS19785 Position (kb) 810 811Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 809.512 kb on - strand, within ABZR87_RS19775at 809.566 kb on - strand, within ABZR87_RS19775at 809.566 kb on - strand, within ABZR87_RS19775at 809.566 kb on - strand, within ABZR87_RS19775at 809.577 kb on + strand, within ABZR87_RS19775at 809.577 kb on + strand, within ABZR87_RS19775at 809.577 kb on + strand, within ABZR87_RS19775at 809.577 kb on + strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.578 kb on - strand, within ABZR87_RS19775at 809.670 kb on - strand, within ABZR87_RS19775at 809.803 kb on - strand, within ABZR87_RS19775at 809.803 kb on - strand, within ABZR87_RS19775at 809.953 kb on - strand, within ABZR87_RS19775at 809.953 kb on - strand, within ABZR87_RS19775at 809.988 kb on + strand, within ABZR87_RS19775at 810.098 kb on + strand, within ABZR87_RS19775at 810.098 kb on + strand, within ABZR87_RS19775at 810.098 kb on + strand, within ABZR87_RS19775at 810.099 kb on - strand, within ABZR87_RS19775at 810.199 kb on + strandat 810.199 kb on + strandat 810.199 kb on + strandat 810.199 kb on + strandat 810.200 kb on - strandat 810.200 kb on - strandat 810.200 kb on - strandat 810.200 kb on - strandat 810.200 kb on - strandat 810.200 kb on - strandat 810.200 kb on - strandat 810.238 kb on + strandat 810.239 kb on - strandat 810.332 kb on + strandat 810.333 kb on - strandat 810.333 kb on - strandat 810.538 kb on + strand, within ABZR87_RS19780at 810.538 kb on + strand, within ABZR87_RS19780at 810.538 kb on + strand, within ABZR87_RS19780at 810.539 kb on - strand, within ABZR87_RS19780at 810.539 kb on - strand, within ABZR87_RS19780at 810.539 kb on - strand, within ABZR87_RS19780at 810.539 kb on - strand, within ABZR87_RS19780at 810.571 kb on + strand, within ABZR87_RS19780at 810.572 kb on - strand, within ABZR87_RS19780at 810.622 kb on - strand, within ABZR87_RS19780at 810.622 kb on - strand, within ABZR87_RS19780at 810.622 kb on - strand, within ABZR87_RS19780at 810.706 kb on + strand, within ABZR87_RS19780at 810.706 kb on + strand, within ABZR87_RS19780at 810.706 kb on + strand, within ABZR87_RS19780at 810.707 kb on - strand, within ABZR87_RS19780at 810.707 kb on - strand, within ABZR87_RS19780at 810.707 kb on - strand, within ABZR87_RS19780at 810.707 kb on - strand, within ABZR87_RS19780at 810.707 kb on - strand, within ABZR87_RS19780at 810.707 kb on - strand, within ABZR87_RS19780at 810.754 kb on + strand, within ABZR87_RS19780at 810.754 kb on + strand, within ABZR87_RS19780at 810.771 kb on + strand, within ABZR87_RS19780at 810.847 kb on + strandat 810.962 kb on - strandat 810.962 kb on - strandat 810.962 kb on - strandat 810.992 kb on - strand, within ABZR87_RS19785at 811.098 kb on + strand, within ABZR87_RS19785at 811.098 kb on + strand, within ABZR87_RS19785at 811.098 kb on + strand, within ABZR87_RS19785at 811.098 kb on + strand, within ABZR87_RS19785at 811.098 kb on + strand, within ABZR87_RS19785at 811.099 kb on - strand, within ABZR87_RS19785at 811.099 kb on - strand, within ABZR87_RS19785at 811.099 kb on - strand, within ABZR87_RS19785at 811.411 kb on + strand, within ABZR87_RS19785at 811.411 kb on + strand, within ABZR87_RS19785at 811.412 kb on - strand, within ABZR87_RS19785at 811.412 kb on - strand, within ABZR87_RS19785at 811.412 kb on - strand, within ABZR87_RS19785at 811.465 kb on + strand, within ABZR87_RS19785at 811.465 kb on + strand, within ABZR87_RS19785at 811.466 kb on - strand, within ABZR87_RS19785at 811.466 kb on - strand, within ABZR87_RS19785at 811.466 kb on - strand, within ABZR87_RS19785at 811.480 kb on + strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.481 kb on - strand, within ABZR87_RS19785at 811.595 kb on + strand, within ABZR87_RS19785at 811.596 kb on - strand, within ABZR87_RS19785at 811.643 kb on - strand, within ABZR87_RS19785at 811.756 kb on + strand, within ABZR87_RS19785at 811.756 kb on - strand, within ABZR87_RS19785at 811.793 kb on + strand, within ABZR87_RS19785at 811.794 kb on - strand, within ABZR87_RS19785

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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809,512 - ABZR87_RS19775 0.18 +1.0
809,566 - ABZR87_RS19775 0.24 +1.7
809,566 - ABZR87_RS19775 0.24 +1.0
809,566 - ABZR87_RS19775 0.24 +1.1
809,577 + ABZR87_RS19775 0.26 -1.3
809,577 + ABZR87_RS19775 0.26 +0.8
809,577 + ABZR87_RS19775 0.26 +1.4
809,577 + ABZR87_RS19775 0.26 -0.5
809,578 - ABZR87_RS19775 0.26 -0.3
809,578 - ABZR87_RS19775 0.26 -0.3
809,578 - ABZR87_RS19775 0.26 -0.5
809,578 - ABZR87_RS19775 0.26 -3.4
809,578 - ABZR87_RS19775 0.26 +0.2
809,578 - ABZR87_RS19775 0.26 +0.3
809,578 - ABZR87_RS19775 0.26 -0.2
809,578 - ABZR87_RS19775 0.26 +2.9
809,578 - ABZR87_RS19775 0.26 +1.1
809,578 - ABZR87_RS19775 0.26 -2.3
809,670 - ABZR87_RS19775 0.36 +0.4
809,803 - ABZR87_RS19775 0.51 +0.3
809,803 - ABZR87_RS19775 0.51 -0.8
809,953 - ABZR87_RS19775 0.67 -0.6
809,953 - ABZR87_RS19775 0.67 -0.5
809,988 + ABZR87_RS19775 0.71 +0.7
810,098 + ABZR87_RS19775 0.83 +0.5
810,098 + ABZR87_RS19775 0.83 -2.2
810,098 + ABZR87_RS19775 0.83 +0.4
810,099 - ABZR87_RS19775 0.83 -0.5
810,199 + +0.3
810,199 + -0.2
810,199 + -3.3
810,199 + -3.6
810,200 - -0.2
810,200 - -0.1
810,200 - +1.2
810,200 - -0.2
810,200 - -1.0
810,200 - +1.1
810,200 - +1.1
810,238 + +0.4
810,239 - -2.3
810,332 + +2.0
810,333 - -1.4
810,333 - -0.1
810,538 + ABZR87_RS19780 0.34 -0.0
810,538 + ABZR87_RS19780 0.34 -0.1
810,538 + ABZR87_RS19780 0.34 -0.3
810,539 - ABZR87_RS19780 0.34 -2.6
810,539 - ABZR87_RS19780 0.34 -0.1
810,539 - ABZR87_RS19780 0.34 -0.9
810,539 - ABZR87_RS19780 0.34 -0.3
810,571 + ABZR87_RS19780 0.41 -0.0
810,572 - ABZR87_RS19780 0.41 +0.0
810,622 - ABZR87_RS19780 0.52 -1.6
810,622 - ABZR87_RS19780 0.52 +3.6
810,622 - ABZR87_RS19780 0.52 +0.4
810,706 + ABZR87_RS19780 0.71 +0.3
810,706 + ABZR87_RS19780 0.71 -0.2
810,706 + ABZR87_RS19780 0.71 +1.0
810,707 - ABZR87_RS19780 0.71 -1.5
810,707 - ABZR87_RS19780 0.71 +1.0
810,707 - ABZR87_RS19780 0.71 +0.9
810,707 - ABZR87_RS19780 0.71 -2.0
810,707 - ABZR87_RS19780 0.71 -1.5
810,707 - ABZR87_RS19780 0.71 +0.5
810,754 + ABZR87_RS19780 0.82 +1.1
810,754 + ABZR87_RS19780 0.82 -1.8
810,771 + ABZR87_RS19780 0.86 +0.2
810,847 + -1.8
810,962 - +0.2
810,962 - -2.5
810,962 - -0.3
810,992 - ABZR87_RS19785 0.12 -0.3
811,098 + ABZR87_RS19785 0.21 +0.7
811,098 + ABZR87_RS19785 0.21 -0.5
811,098 + ABZR87_RS19785 0.21 -0.4
811,098 + ABZR87_RS19785 0.21 +1.6
811,098 + ABZR87_RS19785 0.21 -1.9
811,099 - ABZR87_RS19785 0.21 +0.7
811,099 - ABZR87_RS19785 0.21 -0.2
811,099 - ABZR87_RS19785 0.21 +0.8
811,411 + ABZR87_RS19785 0.48 +0.2
811,411 + ABZR87_RS19785 0.48 -0.2
811,412 - ABZR87_RS19785 0.48 -1.9
811,412 - ABZR87_RS19785 0.48 -0.7
811,412 - ABZR87_RS19785 0.48 +0.9
811,465 + ABZR87_RS19785 0.53 -0.0
811,465 + ABZR87_RS19785 0.53 -0.4
811,466 - ABZR87_RS19785 0.53 +1.3
811,466 - ABZR87_RS19785 0.53 +0.5
811,466 - ABZR87_RS19785 0.53 +0.4
811,480 + ABZR87_RS19785 0.54 -0.6
811,481 - ABZR87_RS19785 0.54 -0.7
811,481 - ABZR87_RS19785 0.54 +0.3
811,481 - ABZR87_RS19785 0.54 +1.3
811,481 - ABZR87_RS19785 0.54 -0.4
811,481 - ABZR87_RS19785 0.54 -0.2
811,481 - ABZR87_RS19785 0.54 -0.0
811,595 + ABZR87_RS19785 0.64 +1.1
811,596 - ABZR87_RS19785 0.64 -0.0
811,643 - ABZR87_RS19785 0.68 -0.3
811,756 + ABZR87_RS19785 0.77 -3.4
811,756 - ABZR87_RS19785 0.77 +0.5
811,793 + ABZR87_RS19785 0.80 +0.6
811,794 - ABZR87_RS19785 0.80 +1.3

Or see this region's nucleotide sequence