Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS19430

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS19420 and ABZR87_RS19425 are separated by 149 nucleotidesABZR87_RS19425 and ABZR87_RS19430 are separated by 1 nucleotidesABZR87_RS19430 and ABZR87_RS19435 overlap by 4 nucleotidesABZR87_RS19435 and ABZR87_RS19440 are separated by 193 nucleotides ABZR87_RS19420: ABZR87_RS19420 - hypothetical protein, at 727,040 to 727,369 _RS19420 ABZR87_RS19425: ABZR87_RS19425 - Mut7-C RNAse domain-containing protein, at 727,519 to 728,295 _RS19425 ABZR87_RS19430: ABZR87_RS19430 - alpha,alpha-trehalose-phosphate synthase (UDP-forming), at 728,297 to 729,727 _RS19430 ABZR87_RS19435: ABZR87_RS19435 - trehalose-phosphatase, at 729,724 to 730,524 _RS19435 ABZR87_RS19440: ABZR87_RS19440 - 2OG-Fe(II) oxygenase, at 730,718 to 731,377 _RS19440 Position (kb) 728 729 730Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.304 kb on + strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.305 kb on - strand, within ABZR87_RS19420at 727.310 kb on + strand, within ABZR87_RS19420at 727.310 kb on + strand, within ABZR87_RS19420at 727.310 kb on + strand, within ABZR87_RS19420at 727.310 kb on + strand, within ABZR87_RS19420at 727.338 kb on - strandat 727.456 kb on + strandat 727.457 kb on - strandat 727.457 kb on - strandat 727.457 kb on - strandat 727.506 kb on + strandat 727.506 kb on + strandat 727.506 kb on + strandat 727.507 kb on - strandat 727.507 kb on - strandat 727.656 kb on + strand, within ABZR87_RS19425at 727.843 kb on + strand, within ABZR87_RS19425at 727.843 kb on + strand, within ABZR87_RS19425at 727.855 kb on + strand, within ABZR87_RS19425at 727.886 kb on - strand, within ABZR87_RS19425at 728.160 kb on + strand, within ABZR87_RS19425at 728.160 kb on + strand, within ABZR87_RS19425at 728.161 kb on - strand, within ABZR87_RS19425at 728.161 kb on - strand, within ABZR87_RS19425at 728.161 kb on - strand, within ABZR87_RS19425at 728.161 kb on - strand, within ABZR87_RS19425at 728.164 kb on + strand, within ABZR87_RS19425at 728.165 kb on - strand, within ABZR87_RS19425at 728.165 kb on - strand, within ABZR87_RS19425at 728.165 kb on - strand, within ABZR87_RS19425at 728.299 kb on - strandat 728.299 kb on - strandat 728.299 kb on - strandat 728.299 kb on - strandat 728.389 kb on - strandat 728.460 kb on + strand, within ABZR87_RS19430at 728.460 kb on + strand, within ABZR87_RS19430at 728.461 kb on - strand, within ABZR87_RS19430at 728.461 kb on - strand, within ABZR87_RS19430at 728.559 kb on + strand, within ABZR87_RS19430at 728.560 kb on - strand, within ABZR87_RS19430at 728.560 kb on - strand, within ABZR87_RS19430at 728.560 kb on - strand, within ABZR87_RS19430at 728.604 kb on + strand, within ABZR87_RS19430at 728.604 kb on + strand, within ABZR87_RS19430at 728.605 kb on - strand, within ABZR87_RS19430at 728.652 kb on + strand, within ABZR87_RS19430at 728.652 kb on + strand, within ABZR87_RS19430at 728.653 kb on - strand, within ABZR87_RS19430at 728.667 kb on + strand, within ABZR87_RS19430at 728.668 kb on - strand, within ABZR87_RS19430at 728.668 kb on - strand, within ABZR87_RS19430at 728.751 kb on + strand, within ABZR87_RS19430at 728.751 kb on + strand, within ABZR87_RS19430at 728.751 kb on + strand, within ABZR87_RS19430at 728.751 kb on + strand, within ABZR87_RS19430at 728.752 kb on - strand, within ABZR87_RS19430at 728.752 kb on - strand, within ABZR87_RS19430at 729.045 kb on + strand, within ABZR87_RS19430at 729.111 kb on + strand, within ABZR87_RS19430at 729.112 kb on - strand, within ABZR87_RS19430at 729.112 kb on - strand, within ABZR87_RS19430at 729.112 kb on - strand, within ABZR87_RS19430at 729.135 kb on + strand, within ABZR87_RS19430at 729.135 kb on + strand, within ABZR87_RS19430at 729.135 kb on + strand, within ABZR87_RS19430at 729.135 kb on + strand, within ABZR87_RS19430at 729.136 kb on - strand, within ABZR87_RS19430at 729.186 kb on + strand, within ABZR87_RS19430at 729.186 kb on + strand, within ABZR87_RS19430at 729.186 kb on + strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430at 729.187 kb on - strand, within ABZR87_RS19430at 729.330 kb on + strand, within ABZR87_RS19430at 729.331 kb on - strand, within ABZR87_RS19430at 729.331 kb on - strand, within ABZR87_RS19430at 729.417 kb on + strand, within ABZR87_RS19430at 729.417 kb on + strand, within ABZR87_RS19430at 729.498 kb on + strand, within ABZR87_RS19430at 729.498 kb on + strand, within ABZR87_RS19430at 729.498 kb on + strand, within ABZR87_RS19430at 729.498 kb on + strand, within ABZR87_RS19430at 729.498 kb on + strand, within ABZR87_RS19430at 729.499 kb on - strand, within ABZR87_RS19430at 729.499 kb on - strand, within ABZR87_RS19430at 729.499 kb on - strand, within ABZR87_RS19430at 729.508 kb on - strand, within ABZR87_RS19430at 729.508 kb on - strand, within ABZR87_RS19430at 729.508 kb on - strand, within ABZR87_RS19430at 729.538 kb on - strand, within ABZR87_RS19430at 729.538 kb on - strand, within ABZR87_RS19430at 730.025 kb on + strand, within ABZR87_RS19435at 730.026 kb on - strand, within ABZR87_RS19435at 730.089 kb on - strand, within ABZR87_RS19435at 730.235 kb on + strand, within ABZR87_RS19435at 730.235 kb on + strand, within ABZR87_RS19435at 730.549 kb on + strandat 730.550 kb on - strandat 730.550 kb on - strandat 730.550 kb on - strandat 730.647 kb on - strandat 730.647 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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727,304 + ABZR87_RS19420 0.80 +0.4
727,304 + ABZR87_RS19420 0.80 -0.7
727,304 + ABZR87_RS19420 0.80 -0.5
727,304 + ABZR87_RS19420 0.80 -2.0
727,304 + ABZR87_RS19420 0.80 +0.1
727,304 + ABZR87_RS19420 0.80 +0.7
727,304 + ABZR87_RS19420 0.80 -3.4
727,304 + ABZR87_RS19420 0.80 +0.6
727,304 + ABZR87_RS19420 0.80 -3.6
727,304 + ABZR87_RS19420 0.80 -0.3
727,304 + ABZR87_RS19420 0.80 -1.0
727,304 + ABZR87_RS19420 0.80 -0.6
727,304 + ABZR87_RS19420 0.80 +1.0
727,305 - ABZR87_RS19420 0.80 -1.7
727,305 - ABZR87_RS19420 0.80 -1.2
727,305 - ABZR87_RS19420 0.80 +1.4
727,305 - ABZR87_RS19420 0.80 -4.4
727,305 - ABZR87_RS19420 0.80 -1.6
727,305 - ABZR87_RS19420 0.80 +0.4
727,305 - ABZR87_RS19420 0.80 +1.8
727,305 - ABZR87_RS19420 0.80 -1.8
727,305 - ABZR87_RS19420 0.80 -0.0
727,305 - ABZR87_RS19420 0.80 +0.4
727,305 - ABZR87_RS19420 0.80 +0.3
727,310 + ABZR87_RS19420 0.82 -1.8
727,310 + ABZR87_RS19420 0.82 -0.2
727,310 + ABZR87_RS19420 0.82 +0.2
727,310 + ABZR87_RS19420 0.82 +0.5
727,338 - -3.6
727,456 + -1.6
727,457 - -1.0
727,457 - +2.3
727,457 - -0.1
727,506 + +0.2
727,506 + -0.3
727,506 + -2.4
727,507 - -0.3
727,507 - -1.0
727,656 + ABZR87_RS19425 0.18 -0.1
727,843 + ABZR87_RS19425 0.42 -0.3
727,843 + ABZR87_RS19425 0.42 -1.4
727,855 + ABZR87_RS19425 0.43 +0.7
727,886 - ABZR87_RS19425 0.47 +0.7
728,160 + ABZR87_RS19425 0.82 -0.6
728,160 + ABZR87_RS19425 0.82 +1.5
728,161 - ABZR87_RS19425 0.83 +3.5
728,161 - ABZR87_RS19425 0.83 +1.3
728,161 - ABZR87_RS19425 0.83 +0.0
728,161 - ABZR87_RS19425 0.83 +3.2
728,164 + ABZR87_RS19425 0.83 -0.9
728,165 - ABZR87_RS19425 0.83 +0.2
728,165 - ABZR87_RS19425 0.83 +0.7
728,165 - ABZR87_RS19425 0.83 -0.6
728,299 - +1.1
728,299 - +0.6
728,299 - -0.3
728,299 - +0.7
728,389 - -0.4
728,460 + ABZR87_RS19430 0.11 -2.8
728,460 + ABZR87_RS19430 0.11 +0.6
728,461 - ABZR87_RS19430 0.11 +1.4
728,461 - ABZR87_RS19430 0.11 -0.5
728,559 + ABZR87_RS19430 0.18 +0.8
728,560 - ABZR87_RS19430 0.18 +1.6
728,560 - ABZR87_RS19430 0.18 +2.7
728,560 - ABZR87_RS19430 0.18 +0.4
728,604 + ABZR87_RS19430 0.21 -0.4
728,604 + ABZR87_RS19430 0.21 +2.7
728,605 - ABZR87_RS19430 0.22 -0.9
728,652 + ABZR87_RS19430 0.25 +0.2
728,652 + ABZR87_RS19430 0.25 -0.9
728,653 - ABZR87_RS19430 0.25 +5.2
728,667 + ABZR87_RS19430 0.26 -0.1
728,668 - ABZR87_RS19430 0.26 +0.5
728,668 - ABZR87_RS19430 0.26 -0.2
728,751 + ABZR87_RS19430 0.32 +0.3
728,751 + ABZR87_RS19430 0.32 +0.5
728,751 + ABZR87_RS19430 0.32 +2.7
728,751 + ABZR87_RS19430 0.32 +0.3
728,752 - ABZR87_RS19430 0.32 -0.0
728,752 - ABZR87_RS19430 0.32 +0.3
729,045 + ABZR87_RS19430 0.52 +1.0
729,111 + ABZR87_RS19430 0.57 +1.6
729,112 - ABZR87_RS19430 0.57 -1.3
729,112 - ABZR87_RS19430 0.57 -1.8
729,112 - ABZR87_RS19430 0.57 -0.1
729,135 + ABZR87_RS19430 0.59 +1.1
729,135 + ABZR87_RS19430 0.59 -2.7
729,135 + ABZR87_RS19430 0.59 -0.2
729,135 + ABZR87_RS19430 0.59 +1.6
729,136 - ABZR87_RS19430 0.59 -0.6
729,186 + ABZR87_RS19430 0.62 -1.6
729,186 + ABZR87_RS19430 0.62 +0.4
729,186 + ABZR87_RS19430 0.62 +0.5
729,187 - ABZR87_RS19430 0.62 -1.5
729,187 - ABZR87_RS19430 0.62 +0.8
729,187 - ABZR87_RS19430 0.62 +0.1
729,187 - ABZR87_RS19430 0.62 -2.0
729,187 - ABZR87_RS19430 0.62 -0.5
729,187 - ABZR87_RS19430 0.62 -3.5
729,187 - ABZR87_RS19430 0.62 -0.2
729,330 + ABZR87_RS19430 0.72 -0.1
729,331 - ABZR87_RS19430 0.72 -1.6
729,331 - ABZR87_RS19430 0.72 -0.3
729,417 + ABZR87_RS19430 0.78 +0.2
729,417 + ABZR87_RS19430 0.78 +0.1
729,498 + ABZR87_RS19430 0.84 +0.5
729,498 + ABZR87_RS19430 0.84 -0.9
729,498 + ABZR87_RS19430 0.84 -2.0
729,498 + ABZR87_RS19430 0.84 -2.2
729,498 + ABZR87_RS19430 0.84 +1.1
729,499 - ABZR87_RS19430 0.84 -0.6
729,499 - ABZR87_RS19430 0.84 -1.6
729,499 - ABZR87_RS19430 0.84 -1.2
729,508 - ABZR87_RS19430 0.85 -0.2
729,508 - ABZR87_RS19430 0.85 +1.3
729,508 - ABZR87_RS19430 0.85 -1.5
729,538 - ABZR87_RS19430 0.87 +1.0
729,538 - ABZR87_RS19430 0.87 +0.3
730,025 + ABZR87_RS19435 0.38 -1.7
730,026 - ABZR87_RS19435 0.38 -1.2
730,089 - ABZR87_RS19435 0.46 -2.2
730,235 + ABZR87_RS19435 0.64 +0.3
730,235 + ABZR87_RS19435 0.64 -3.0
730,549 + +0.2
730,550 - -0.5
730,550 - -0.9
730,550 - -3.2
730,647 - +0.3
730,647 - -0.8

Or see this region's nucleotide sequence