Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS18825

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS18820 and ABZR87_RS18825 are separated by 252 nucleotidesABZR87_RS18825 and ABZR87_RS18830 are separated by 7 nucleotidesABZR87_RS18830 and ABZR87_RS18835 are separated by 86 nucleotides ABZR87_RS18820: ABZR87_RS18820 - hypothetical protein, at 574,549 to 576,651 _RS18820 ABZR87_RS18825: ABZR87_RS18825 - LuxR family transcriptional regulator, at 576,904 to 578,022 _RS18825 ABZR87_RS18830: ABZR87_RS18830 - NIPSNAP family protein, at 578,030 to 578,335 _RS18830 ABZR87_RS18835: ABZR87_RS18835 - cytochrome d ubiquinol oxidase subunit II, at 578,422 to 579,453 _RS18835 Position (kb) 576 577 578 579Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 576.000 kb on + strand, within ABZR87_RS18820at 576.001 kb on - strand, within ABZR87_RS18820at 576.177 kb on - strand, within ABZR87_RS18820at 576.806 kb on + strandat 576.806 kb on + strandat 576.806 kb on + strandat 576.807 kb on - strandat 576.807 kb on - strandat 576.807 kb on - strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.820 kb on + strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.821 kb on - strandat 576.934 kb on + strandat 576.934 kb on + strandat 577.060 kb on + strand, within ABZR87_RS18825at 577.060 kb on + strand, within ABZR87_RS18825at 577.060 kb on + strand, within ABZR87_RS18825at 577.061 kb on - strand, within ABZR87_RS18825at 577.061 kb on - strand, within ABZR87_RS18825at 577.108 kb on + strand, within ABZR87_RS18825at 577.108 kb on + strand, within ABZR87_RS18825at 577.109 kb on - strand, within ABZR87_RS18825at 577.109 kb on - strand, within ABZR87_RS18825at 577.112 kb on - strand, within ABZR87_RS18825at 577.112 kb on - strand, within ABZR87_RS18825at 577.138 kb on + strand, within ABZR87_RS18825at 577.138 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.149 kb on + strand, within ABZR87_RS18825at 577.150 kb on - strand, within ABZR87_RS18825at 577.183 kb on + strand, within ABZR87_RS18825at 577.183 kb on + strand, within ABZR87_RS18825at 577.183 kb on + strand, within ABZR87_RS18825at 577.184 kb on - strand, within ABZR87_RS18825at 577.184 kb on - strand, within ABZR87_RS18825at 577.184 kb on - strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.198 kb on + strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.199 kb on - strand, within ABZR87_RS18825at 577.219 kb on + strand, within ABZR87_RS18825at 577.220 kb on - strand, within ABZR87_RS18825at 577.220 kb on - strand, within ABZR87_RS18825at 577.928 kb on + strandat 577.928 kb on + strandat 577.928 kb on + strandat 578.039 kb on + strandat 578.040 kb on - strandat 578.040 kb on - strandat 578.065 kb on - strand, within ABZR87_RS18830at 578.094 kb on + strand, within ABZR87_RS18830at 578.142 kb on + strand, within ABZR87_RS18830at 578.142 kb on + strand, within ABZR87_RS18830at 578.151 kb on + strand, within ABZR87_RS18830at 578.220 kb on + strand, within ABZR87_RS18830at 578.220 kb on + strand, within ABZR87_RS18830at 578.221 kb on - strand, within ABZR87_RS18830at 578.275 kb on - strand, within ABZR87_RS18830at 578.275 kb on - strand, within ABZR87_RS18830at 578.313 kb on + strandat 578.313 kb on + strandat 578.314 kb on - strandat 578.314 kb on - strandat 578.369 kb on + strandat 578.370 kb on - strandat 578.370 kb on - strandat 578.421 kb on - strandat 578.426 kb on + strandat 578.426 kb on + strandat 578.427 kb on - strandat 578.427 kb on - strandat 578.427 kb on - strandat 578.427 kb on - strandat 578.427 kb on - strandat 578.429 kb on + strandat 578.465 kb on + strandat 578.466 kb on - strandat 578.466 kb on - strandat 578.471 kb on + strandat 578.471 kb on + strandat 578.472 kb on - strandat 578.472 kb on - strandat 578.472 kb on - strandat 578.481 kb on - strandat 578.600 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.020 kb on + strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.021 kb on - strand, within ABZR87_RS18835at 579.022 kb on + strand, within ABZR87_RS18835

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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576,000 + ABZR87_RS18820 0.69 +0.7
576,001 - ABZR87_RS18820 0.69 -2.3
576,177 - ABZR87_RS18820 0.77 -0.5
576,806 + -0.4
576,806 + -0.1
576,806 + -0.4
576,807 - -1.1
576,807 - -0.0
576,807 - +0.8
576,820 + +0.4
576,820 + +0.5
576,820 + -0.2
576,820 + +0.8
576,820 + +0.8
576,820 + -3.6
576,820 + +0.0
576,820 + -0.6
576,820 + -1.6
576,820 + -0.0
576,821 - +1.1
576,821 - +1.9
576,821 - -2.4
576,821 - +0.0
576,821 - -1.1
576,821 - -1.3
576,821 - -2.5
576,821 - +0.9
576,821 - -1.0
576,821 - +0.1
576,934 + -1.6
576,934 + +0.1
577,060 + ABZR87_RS18825 0.14 -0.3
577,060 + ABZR87_RS18825 0.14 +0.4
577,060 + ABZR87_RS18825 0.14 -0.4
577,061 - ABZR87_RS18825 0.14 -0.8
577,061 - ABZR87_RS18825 0.14 -0.0
577,108 + ABZR87_RS18825 0.18 -3.0
577,108 + ABZR87_RS18825 0.18 -3.4
577,109 - ABZR87_RS18825 0.18 -0.4
577,109 - ABZR87_RS18825 0.18 -0.4
577,112 - ABZR87_RS18825 0.19 +0.5
577,112 - ABZR87_RS18825 0.19 +1.3
577,138 + ABZR87_RS18825 0.21 -2.7
577,138 + ABZR87_RS18825 0.21 -0.8
577,149 + ABZR87_RS18825 0.22 +0.2
577,149 + ABZR87_RS18825 0.22 -0.1
577,149 + ABZR87_RS18825 0.22 +0.7
577,149 + ABZR87_RS18825 0.22 -0.4
577,149 + ABZR87_RS18825 0.22 -1.0
577,149 + ABZR87_RS18825 0.22 +0.7
577,149 + ABZR87_RS18825 0.22 -0.8
577,150 - ABZR87_RS18825 0.22 -3.0
577,183 + ABZR87_RS18825 0.25 +1.0
577,183 + ABZR87_RS18825 0.25 -0.6
577,183 + ABZR87_RS18825 0.25 -3.7
577,184 - ABZR87_RS18825 0.25 +2.2
577,184 - ABZR87_RS18825 0.25 -0.9
577,184 - ABZR87_RS18825 0.25 -0.8
577,198 + ABZR87_RS18825 0.26 -1.5
577,198 + ABZR87_RS18825 0.26 +0.1
577,198 + ABZR87_RS18825 0.26 -0.1
577,198 + ABZR87_RS18825 0.26 +1.5
577,198 + ABZR87_RS18825 0.26 -3.8
577,198 + ABZR87_RS18825 0.26 -0.2
577,198 + ABZR87_RS18825 0.26 +1.7
577,198 + ABZR87_RS18825 0.26 +1.2
577,199 - ABZR87_RS18825 0.26 +0.7
577,199 - ABZR87_RS18825 0.26 +0.2
577,199 - ABZR87_RS18825 0.26 -0.5
577,199 - ABZR87_RS18825 0.26 -3.1
577,199 - ABZR87_RS18825 0.26 +0.5
577,219 + ABZR87_RS18825 0.28 +0.6
577,220 - ABZR87_RS18825 0.28 +1.0
577,220 - ABZR87_RS18825 0.28 +0.5
577,928 + +2.2
577,928 + +0.1
577,928 + +1.3
578,039 + +3.2
578,040 - +0.2
578,040 - +0.7
578,065 - ABZR87_RS18830 0.11 -0.8
578,094 + ABZR87_RS18830 0.21 -2.3
578,142 + ABZR87_RS18830 0.37 -1.7
578,142 + ABZR87_RS18830 0.37 -0.8
578,151 + ABZR87_RS18830 0.40 +2.0
578,220 + ABZR87_RS18830 0.62 -0.4
578,220 + ABZR87_RS18830 0.62 +2.5
578,221 - ABZR87_RS18830 0.62 +1.5
578,275 - ABZR87_RS18830 0.80 +0.9
578,275 - ABZR87_RS18830 0.80 +0.4
578,313 + +2.4
578,313 + +0.4
578,314 - +0.1
578,314 - +0.4
578,369 + -0.1
578,370 - -2.6
578,370 - +1.2
578,421 - +1.7
578,426 + -3.4
578,426 + +0.8
578,427 - -1.6
578,427 - -0.8
578,427 - -3.5
578,427 - +0.8
578,427 - +0.2
578,429 + +0.5
578,465 + -0.6
578,466 - -1.4
578,466 - -0.2
578,471 + -0.5
578,471 + +0.3
578,472 - +0.2
578,472 - -1.1
578,472 - +0.6
578,481 - -0.1
578,600 + ABZR87_RS18835 0.17 -2.3
579,020 + ABZR87_RS18835 0.58 -2.1
579,020 + ABZR87_RS18835 0.58 -1.7
579,020 + ABZR87_RS18835 0.58 -0.5
579,020 + ABZR87_RS18835 0.58 +1.3
579,020 + ABZR87_RS18835 0.58 +1.9
579,020 + ABZR87_RS18835 0.58 -0.4
579,020 + ABZR87_RS18835 0.58 -0.1
579,020 + ABZR87_RS18835 0.58 +0.3
579,020 + ABZR87_RS18835 0.58 -1.8
579,021 - ABZR87_RS18835 0.58 +1.2
579,021 - ABZR87_RS18835 0.58 -0.5
579,021 - ABZR87_RS18835 0.58 +2.8
579,021 - ABZR87_RS18835 0.58 +0.2
579,021 - ABZR87_RS18835 0.58 +1.6
579,021 - ABZR87_RS18835 0.58 +0.4
579,021 - ABZR87_RS18835 0.58 -2.4
579,021 - ABZR87_RS18835 0.58 -0.4
579,021 - ABZR87_RS18835 0.58 -3.1
579,022 + ABZR87_RS18835 0.58 -2.4

Or see this region's nucleotide sequence