Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17485

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17475 and ABZR87_RS17480 overlap by 1 nucleotidesABZR87_RS17480 and ABZR87_RS17485 overlap by 4 nucleotidesABZR87_RS17485 and ABZR87_RS17490 are separated by 361 nucleotides ABZR87_RS17475: ABZR87_RS17475 - 3-hydroxyisobutyrate dehydrogenase, at 280,587 to 281,480 _RS17475 ABZR87_RS17480: ABZR87_RS17480 - enoyl-CoA hydratase, at 281,480 to 282,277 _RS17480 ABZR87_RS17485: ABZR87_RS17485 - enoyl-CoA hydratase/isomerase family protein, at 282,274 to 283,425 _RS17485 ABZR87_RS17490: ABZR87_RS17490 - phospholipase D-like domain-containing protein, at 283,787 to 285,556 _RS17490 Position (kb) 282 283 284Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 281.286 kb on + strand, within ABZR87_RS17475at 281.370 kb on + strand, within ABZR87_RS17475at 281.370 kb on + strand, within ABZR87_RS17475at 281.458 kb on - strandat 282.366 kb on + strandat 282.530 kb on - strand, within ABZR87_RS17485at 282.595 kb on + strand, within ABZR87_RS17485at 282.595 kb on + strand, within ABZR87_RS17485at 282.811 kb on + strand, within ABZR87_RS17485at 282.811 kb on + strand, within ABZR87_RS17485at 282.811 kb on + strand, within ABZR87_RS17485at 282.811 kb on + strand, within ABZR87_RS17485at 282.812 kb on - strand, within ABZR87_RS17485at 282.812 kb on - strand, within ABZR87_RS17485at 282.812 kb on - strand, within ABZR87_RS17485at 283.034 kb on - strand, within ABZR87_RS17485at 283.034 kb on - strand, within ABZR87_RS17485at 283.034 kb on - strand, within ABZR87_RS17485at 283.493 kb on + strandat 283.493 kb on + strandat 283.493 kb on + strandat 283.494 kb on - strandat 283.494 kb on - strandat 283.494 kb on - strandat 283.527 kb on + strandat 283.527 kb on + strandat 283.527 kb on + strandat 283.527 kb on + strandat 283.527 kb on + strandat 283.528 kb on - strandat 283.528 kb on - strandat 283.528 kb on - strandat 283.533 kb on + strandat 283.533 kb on + strandat 283.538 kb on + strandat 283.538 kb on + strandat 283.539 kb on - strandat 283.539 kb on - strandat 283.578 kb on - strandat 283.628 kb on - strandat 283.751 kb on - strandat 283.751 kb on - strandat 283.751 kb on - strandat 283.823 kb on + strandat 283.823 kb on + strandat 283.823 kb on + strandat 283.824 kb on - strandat 283.824 kb on - strandat 283.824 kb on - strandat 283.824 kb on - strandat 283.998 kb on - strand, within ABZR87_RS17490at 284.075 kb on + strand, within ABZR87_RS17490at 284.075 kb on + strand, within ABZR87_RS17490at 284.075 kb on + strand, within ABZR87_RS17490at 284.076 kb on - strand, within ABZR87_RS17490at 284.076 kb on - strand, within ABZR87_RS17490at 284.076 kb on - strand, within ABZR87_RS17490at 284.076 kb on - strand, within ABZR87_RS17490at 284.076 kb on - strand, within ABZR87_RS17490at 284.093 kb on + strand, within ABZR87_RS17490at 284.204 kb on + strand, within ABZR87_RS17490at 284.205 kb on - strand, within ABZR87_RS17490at 284.205 kb on - strand, within ABZR87_RS17490at 284.205 kb on - strand, within ABZR87_RS17490at 284.295 kb on - strand, within ABZR87_RS17490at 284.309 kb on + strand, within ABZR87_RS17490at 284.321 kb on + strand, within ABZR87_RS17490at 284.321 kb on + strand, within ABZR87_RS17490at 284.321 kb on + strand, within ABZR87_RS17490at 284.321 kb on + strand, within ABZR87_RS17490at 284.321 kb on + strand, within ABZR87_RS17490at 284.322 kb on - strand, within ABZR87_RS17490at 284.322 kb on - strand, within ABZR87_RS17490at 284.322 kb on - strand, within ABZR87_RS17490at 284.322 kb on - strand, within ABZR87_RS17490at 284.328 kb on - strand, within ABZR87_RS17490at 284.393 kb on + strand, within ABZR87_RS17490at 284.414 kb on + strand, within ABZR87_RS17490at 284.414 kb on + strand, within ABZR87_RS17490at 284.414 kb on + strand, within ABZR87_RS17490at 284.415 kb on - strand, within ABZR87_RS17490

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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281,286 + ABZR87_RS17475 0.78 +1.4
281,370 + ABZR87_RS17475 0.88 +0.5
281,370 + ABZR87_RS17475 0.88 +2.0
281,458 - -0.3
282,366 + -1.6
282,530 - ABZR87_RS17485 0.22 +1.4
282,595 + ABZR87_RS17485 0.28 +0.1
282,595 + ABZR87_RS17485 0.28 +0.9
282,811 + ABZR87_RS17485 0.47 +2.0
282,811 + ABZR87_RS17485 0.47 -1.6
282,811 + ABZR87_RS17485 0.47 +0.6
282,811 + ABZR87_RS17485 0.47 -3.4
282,812 - ABZR87_RS17485 0.47 +0.4
282,812 - ABZR87_RS17485 0.47 -1.9
282,812 - ABZR87_RS17485 0.47 -3.5
283,034 - ABZR87_RS17485 0.66 +1.4
283,034 - ABZR87_RS17485 0.66 -1.4
283,034 - ABZR87_RS17485 0.66 -3.7
283,493 + +1.1
283,493 + +0.5
283,493 + -1.8
283,494 - -0.3
283,494 - -0.6
283,494 - -0.2
283,527 + -1.6
283,527 + -1.4
283,527 + +2.6
283,527 + -1.8
283,527 + +1.2
283,528 - +3.3
283,528 - -0.3
283,528 - +0.1
283,533 + -0.3
283,533 + +0.3
283,538 + -3.0
283,538 + +0.2
283,539 - -1.4
283,539 - +0.8
283,578 - -2.9
283,628 - -3.1
283,751 - -1.8
283,751 - +0.3
283,751 - -3.1
283,823 + +1.1
283,823 + +0.7
283,823 + +0.8
283,824 - -0.3
283,824 - +0.4
283,824 - -3.7
283,824 - -0.2
283,998 - ABZR87_RS17490 0.12 +1.1
284,075 + ABZR87_RS17490 0.16 +1.1
284,075 + ABZR87_RS17490 0.16 -2.5
284,075 + ABZR87_RS17490 0.16 +0.1
284,076 - ABZR87_RS17490 0.16 +1.0
284,076 - ABZR87_RS17490 0.16 +0.6
284,076 - ABZR87_RS17490 0.16 -0.5
284,076 - ABZR87_RS17490 0.16 +1.1
284,076 - ABZR87_RS17490 0.16 +0.5
284,093 + ABZR87_RS17490 0.17 -3.7
284,204 + ABZR87_RS17490 0.24 -0.7
284,205 - ABZR87_RS17490 0.24 -0.1
284,205 - ABZR87_RS17490 0.24 -0.1
284,205 - ABZR87_RS17490 0.24 +2.7
284,295 - ABZR87_RS17490 0.29 +1.2
284,309 + ABZR87_RS17490 0.29 +0.5
284,321 + ABZR87_RS17490 0.30 -0.8
284,321 + ABZR87_RS17490 0.30 +0.6
284,321 + ABZR87_RS17490 0.30 -0.9
284,321 + ABZR87_RS17490 0.30 -3.8
284,321 + ABZR87_RS17490 0.30 -0.9
284,322 - ABZR87_RS17490 0.30 +1.1
284,322 - ABZR87_RS17490 0.30 -1.6
284,322 - ABZR87_RS17490 0.30 -0.8
284,322 - ABZR87_RS17490 0.30 -1.6
284,328 - ABZR87_RS17490 0.31 +0.4
284,393 + ABZR87_RS17490 0.34 -1.8
284,414 + ABZR87_RS17490 0.35 +1.2
284,414 + ABZR87_RS17490 0.35 +0.9
284,414 + ABZR87_RS17490 0.35 +0.3
284,415 - ABZR87_RS17490 0.35 +0.4

Or see this region's nucleotide sequence