Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS17445

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS17435 and ABZR87_RS17440 are separated by 134 nucleotidesABZR87_RS17440 and ABZR87_RS17445 overlap by 4 nucleotidesABZR87_RS17445 and ABZR87_RS17450 are separated by 8 nucleotidesABZR87_RS17450 and ABZR87_RS17455 overlap by 25 nucleotides ABZR87_RS17435: ABZR87_RS17435 - LysR family transcriptional regulator, at 270,263 to 271,156 _RS17435 ABZR87_RS17440: ABZR87_RS17440 - (2Fe-2S)-binding protein, at 271,291 to 271,755 _RS17440 ABZR87_RS17445: ABZR87_RS17445 - molybdopterin cofactor-binding domain-containing protein, at 271,752 to 273,956 _RS17445 ABZR87_RS17450: ABZR87_RS17450 - LysR family transcriptional regulator, at 273,965 to 274,894 _RS17450 ABZR87_RS17455: ABZR87_RS17455 - AraC family transcriptional regulator, at 274,870 to 275,886 _RS17455 Position (kb) 271 272 273 274Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 271.087 kb on + strandat 271.087 kb on + strandat 271.088 kb on - strandat 271.152 kb on + strandat 271.152 kb on + strandat 271.152 kb on + strandat 271.153 kb on - strandat 271.177 kb on + strandat 271.188 kb on - strandat 271.238 kb on + strandat 271.239 kb on - strandat 271.239 kb on - strandat 271.303 kb on - strandat 271.303 kb on - strandat 271.559 kb on + strand, within ABZR87_RS17440at 271.700 kb on - strand, within ABZR87_RS17440at 272.067 kb on + strand, within ABZR87_RS17445at 272.067 kb on + strand, within ABZR87_RS17445at 272.067 kb on + strand, within ABZR87_RS17445at 272.068 kb on - strand, within ABZR87_RS17445at 272.091 kb on + strand, within ABZR87_RS17445at 272.092 kb on - strand, within ABZR87_RS17445at 272.092 kb on - strand, within ABZR87_RS17445at 272.092 kb on - strand, within ABZR87_RS17445at 272.092 kb on - strand, within ABZR87_RS17445at 272.127 kb on + strand, within ABZR87_RS17445at 272.127 kb on + strand, within ABZR87_RS17445at 272.265 kb on + strand, within ABZR87_RS17445at 272.266 kb on - strand, within ABZR87_RS17445at 272.266 kb on - strand, within ABZR87_RS17445at 272.266 kb on - strand, within ABZR87_RS17445at 272.343 kb on + strand, within ABZR87_RS17445at 272.343 kb on + strand, within ABZR87_RS17445at 272.343 kb on + strand, within ABZR87_RS17445at 272.343 kb on + strand, within ABZR87_RS17445at 272.344 kb on - strand, within ABZR87_RS17445at 272.344 kb on - strand, within ABZR87_RS17445at 272.344 kb on - strand, within ABZR87_RS17445at 272.344 kb on - strand, within ABZR87_RS17445at 272.403 kb on + strand, within ABZR87_RS17445at 272.403 kb on + strand, within ABZR87_RS17445at 272.598 kb on + strand, within ABZR87_RS17445at 272.598 kb on + strand, within ABZR87_RS17445at 272.598 kb on + strand, within ABZR87_RS17445at 272.598 kb on + strand, within ABZR87_RS17445at 272.599 kb on - strand, within ABZR87_RS17445at 272.875 kb on - strand, within ABZR87_RS17445at 272.950 kb on + strand, within ABZR87_RS17445at 272.950 kb on + strand, within ABZR87_RS17445at 272.951 kb on - strand, within ABZR87_RS17445at 272.951 kb on - strand, within ABZR87_RS17445at 272.951 kb on - strand, within ABZR87_RS17445at 273.003 kb on + strand, within ABZR87_RS17445at 273.024 kb on + strand, within ABZR87_RS17445at 273.024 kb on + strand, within ABZR87_RS17445at 273.024 kb on + strand, within ABZR87_RS17445at 273.024 kb on + strand, within ABZR87_RS17445at 273.025 kb on - strand, within ABZR87_RS17445at 273.111 kb on + strand, within ABZR87_RS17445at 273.111 kb on + strand, within ABZR87_RS17445at 273.112 kb on - strand, within ABZR87_RS17445at 273.112 kb on - strand, within ABZR87_RS17445at 273.112 kb on - strand, within ABZR87_RS17445at 273.237 kb on + strand, within ABZR87_RS17445at 273.237 kb on + strand, within ABZR87_RS17445at 273.290 kb on + strand, within ABZR87_RS17445at 273.290 kb on + strand, within ABZR87_RS17445at 273.290 kb on + strand, within ABZR87_RS17445at 273.290 kb on + strand, within ABZR87_RS17445at 273.290 kb on + strand, within ABZR87_RS17445at 273.290 kb on + strand, within ABZR87_RS17445at 273.291 kb on - strand, within ABZR87_RS17445at 273.291 kb on - strand, within ABZR87_RS17445at 273.356 kb on + strand, within ABZR87_RS17445at 273.357 kb on - strand, within ABZR87_RS17445at 273.561 kb on + strand, within ABZR87_RS17445at 273.561 kb on + strand, within ABZR87_RS17445at 273.562 kb on - strand, within ABZR87_RS17445at 273.678 kb on + strand, within ABZR87_RS17445at 273.679 kb on - strand, within ABZR87_RS17445at 273.955 kb on - strandat 273.961 kb on + strandat 273.961 kb on + strandat 273.962 kb on - strandat 273.987 kb on - strandat 274.042 kb on + strandat 274.043 kb on - strandat 274.129 kb on - strand, within ABZR87_RS17450at 274.587 kb on + strand, within ABZR87_RS17450at 274.587 kb on + strand, within ABZR87_RS17450at 274.587 kb on + strand, within ABZR87_RS17450at 274.588 kb on - strand, within ABZR87_RS17450at 274.588 kb on - strand, within ABZR87_RS17450at 274.588 kb on - strand, within ABZR87_RS17450at 274.588 kb on - strand, within ABZR87_RS17450at 274.588 kb on - strand, within ABZR87_RS17450at 274.588 kb on - strand, within ABZR87_RS17450at 274.766 kb on + strand, within ABZR87_RS17450at 274.767 kb on - strand, within ABZR87_RS17450at 274.767 kb on - strand, within ABZR87_RS17450

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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271,087 + -2.3
271,087 + +0.7
271,088 - +1.8
271,152 + +1.0
271,152 + -2.5
271,152 + -0.4
271,153 - -0.0
271,177 + -0.6
271,188 - -1.8
271,238 + -0.8
271,239 - +0.2
271,239 - +2.7
271,303 - -2.5
271,303 - +1.0
271,559 + ABZR87_RS17440 0.58 +0.3
271,700 - ABZR87_RS17440 0.88 +0.4
272,067 + ABZR87_RS17445 0.14 -0.0
272,067 + ABZR87_RS17445 0.14 -1.5
272,067 + ABZR87_RS17445 0.14 +1.4
272,068 - ABZR87_RS17445 0.14 -3.1
272,091 + ABZR87_RS17445 0.15 -0.9
272,092 - ABZR87_RS17445 0.15 +0.4
272,092 - ABZR87_RS17445 0.15 -1.1
272,092 - ABZR87_RS17445 0.15 +0.7
272,092 - ABZR87_RS17445 0.15 +1.1
272,127 + ABZR87_RS17445 0.17 -0.9
272,127 + ABZR87_RS17445 0.17 -2.1
272,265 + ABZR87_RS17445 0.23 -2.0
272,266 - ABZR87_RS17445 0.23 -0.3
272,266 - ABZR87_RS17445 0.23 +1.3
272,266 - ABZR87_RS17445 0.23 +0.0
272,343 + ABZR87_RS17445 0.27 +0.2
272,343 + ABZR87_RS17445 0.27 +0.7
272,343 + ABZR87_RS17445 0.27 +0.4
272,343 + ABZR87_RS17445 0.27 +0.7
272,344 - ABZR87_RS17445 0.27 -2.7
272,344 - ABZR87_RS17445 0.27 -0.3
272,344 - ABZR87_RS17445 0.27 -0.8
272,344 - ABZR87_RS17445 0.27 -3.0
272,403 + ABZR87_RS17445 0.30 -1.9
272,403 + ABZR87_RS17445 0.30 -3.4
272,598 + ABZR87_RS17445 0.38 -3.2
272,598 + ABZR87_RS17445 0.38 -3.1
272,598 + ABZR87_RS17445 0.38 -2.1
272,598 + ABZR87_RS17445 0.38 +0.1
272,599 - ABZR87_RS17445 0.38 -0.1
272,875 - ABZR87_RS17445 0.51 +0.4
272,950 + ABZR87_RS17445 0.54 -0.8
272,950 + ABZR87_RS17445 0.54 -0.0
272,951 - ABZR87_RS17445 0.54 -0.3
272,951 - ABZR87_RS17445 0.54 -0.1
272,951 - ABZR87_RS17445 0.54 -1.0
273,003 + ABZR87_RS17445 0.57 -0.7
273,024 + ABZR87_RS17445 0.58 -2.4
273,024 + ABZR87_RS17445 0.58 -0.0
273,024 + ABZR87_RS17445 0.58 -3.3
273,024 + ABZR87_RS17445 0.58 +0.3
273,025 - ABZR87_RS17445 0.58 +0.0
273,111 + ABZR87_RS17445 0.62 +1.2
273,111 + ABZR87_RS17445 0.62 -0.2
273,112 - ABZR87_RS17445 0.62 -2.3
273,112 - ABZR87_RS17445 0.62 -2.7
273,112 - ABZR87_RS17445 0.62 +1.5
273,237 + ABZR87_RS17445 0.67 -2.1
273,237 + ABZR87_RS17445 0.67 +0.7
273,290 + ABZR87_RS17445 0.70 -1.5
273,290 + ABZR87_RS17445 0.70 -0.5
273,290 + ABZR87_RS17445 0.70 -0.1
273,290 + ABZR87_RS17445 0.70 -0.3
273,290 + ABZR87_RS17445 0.70 -0.2
273,290 + ABZR87_RS17445 0.70 -1.3
273,291 - ABZR87_RS17445 0.70 -1.8
273,291 - ABZR87_RS17445 0.70 +0.5
273,356 + ABZR87_RS17445 0.73 -0.1
273,357 - ABZR87_RS17445 0.73 -0.5
273,561 + ABZR87_RS17445 0.82 -1.8
273,561 + ABZR87_RS17445 0.82 +0.7
273,562 - ABZR87_RS17445 0.82 +1.5
273,678 + ABZR87_RS17445 0.87 +1.3
273,679 - ABZR87_RS17445 0.87 -0.2
273,955 - +0.8
273,961 + +1.0
273,961 + +1.4
273,962 - +0.4
273,987 - +0.4
274,042 + -1.1
274,043 - -0.0
274,129 - ABZR87_RS17450 0.18 -3.1
274,587 + ABZR87_RS17450 0.67 +0.4
274,587 + ABZR87_RS17450 0.67 +1.2
274,587 + ABZR87_RS17450 0.67 +1.9
274,588 - ABZR87_RS17450 0.67 +2.7
274,588 - ABZR87_RS17450 0.67 -0.5
274,588 - ABZR87_RS17450 0.67 +0.2
274,588 - ABZR87_RS17450 0.67 -0.3
274,588 - ABZR87_RS17450 0.67 +0.9
274,588 - ABZR87_RS17450 0.67 +0.7
274,766 + ABZR87_RS17450 0.86 -2.7
274,767 - ABZR87_RS17450 0.86 +1.0
274,767 - ABZR87_RS17450 0.86 +0.4

Or see this region's nucleotide sequence