Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07625

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07620 and ABZR87_RS07625 are separated by 63 nucleotidesABZR87_RS07625 and ABZR87_RS07630 are separated by 99 nucleotides ABZR87_RS07620: ABZR87_RS07620 - Holliday junction branch migration DNA helicase RuvB, at 1,614,475 to 1,615,551 _RS07620 ABZR87_RS07625: ABZR87_RS07625 - Holliday junction branch migration protein RuvA, at 1,615,615 to 1,616,196 _RS07625 ABZR87_RS07630: ABZR87_RS07630 - glycerophosphodiester phosphodiesterase, at 1,616,296 to 1,617,438 _RS07630 Position (kb) 1615 1616 1617Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1614.966 kb on + strand, within ABZR87_RS07620at 1614.968 kb on + strand, within ABZR87_RS07620at 1614.968 kb on + strand, within ABZR87_RS07620at 1614.969 kb on - strand, within ABZR87_RS07620at 1614.969 kb on - strand, within ABZR87_RS07620at 1614.969 kb on - strand, within ABZR87_RS07620at 1615.122 kb on - strand, within ABZR87_RS07620at 1615.427 kb on + strand, within ABZR87_RS07620at 1615.427 kb on + strand, within ABZR87_RS07620at 1615.428 kb on - strand, within ABZR87_RS07620at 1615.428 kb on - strand, within ABZR87_RS07620at 1615.592 kb on + strandat 1615.592 kb on + strandat 1615.592 kb on + strandat 1615.593 kb on - strandat 1615.593 kb on - strandat 1615.593 kb on - strandat 1615.716 kb on - strand, within ABZR87_RS07625at 1615.920 kb on + strand, within ABZR87_RS07625at 1615.921 kb on - strand, within ABZR87_RS07625at 1616.090 kb on + strand, within ABZR87_RS07625at 1616.090 kb on + strand, within ABZR87_RS07625at 1616.090 kb on + strand, within ABZR87_RS07625at 1616.091 kb on - strand, within ABZR87_RS07625at 1616.243 kb on - strandat 1616.275 kb on + strandat 1616.347 kb on - strandat 1616.419 kb on - strand, within ABZR87_RS07630at 1616.474 kb on + strand, within ABZR87_RS07630at 1616.474 kb on + strand, within ABZR87_RS07630at 1616.474 kb on + strand, within ABZR87_RS07630at 1616.474 kb on + strand, within ABZR87_RS07630at 1616.475 kb on - strand, within ABZR87_RS07630at 1616.594 kb on + strand, within ABZR87_RS07630at 1616.708 kb on - strand, within ABZR87_RS07630at 1616.783 kb on + strand, within ABZR87_RS07630at 1616.783 kb on + strand, within ABZR87_RS07630at 1616.783 kb on + strand, within ABZR87_RS07630at 1616.784 kb on - strand, within ABZR87_RS07630at 1616.784 kb on - strand, within ABZR87_RS07630at 1616.784 kb on - strand, within ABZR87_RS07630at 1616.784 kb on - strand, within ABZR87_RS07630at 1616.867 kb on - strand, within ABZR87_RS07630at 1616.870 kb on + strand, within ABZR87_RS07630at 1616.871 kb on - strand, within ABZR87_RS07630at 1616.895 kb on - strand, within ABZR87_RS07630

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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1,614,966 + ABZR87_RS07620 0.46 -0.7
1,614,968 + ABZR87_RS07620 0.46 -1.3
1,614,968 + ABZR87_RS07620 0.46 -2.0
1,614,969 - ABZR87_RS07620 0.46 -2.1
1,614,969 - ABZR87_RS07620 0.46 -1.0
1,614,969 - ABZR87_RS07620 0.46 -2.9
1,615,122 - ABZR87_RS07620 0.60 -1.7
1,615,427 + ABZR87_RS07620 0.88 -2.9
1,615,427 + ABZR87_RS07620 0.88 -1.8
1,615,428 - ABZR87_RS07620 0.88 -0.3
1,615,428 - ABZR87_RS07620 0.88 -2.0
1,615,592 + -0.3
1,615,592 + -1.5
1,615,592 + -3.4
1,615,593 - -2.6
1,615,593 - +0.5
1,615,593 - +0.9
1,615,716 - ABZR87_RS07625 0.17 -3.5
1,615,920 + ABZR87_RS07625 0.52 -0.7
1,615,921 - ABZR87_RS07625 0.53 -2.4
1,616,090 + ABZR87_RS07625 0.82 -1.8
1,616,090 + ABZR87_RS07625 0.82 -3.5
1,616,090 + ABZR87_RS07625 0.82 -1.0
1,616,091 - ABZR87_RS07625 0.82 -1.8
1,616,243 - +1.5
1,616,275 + -3.8
1,616,347 - +0.3
1,616,419 - ABZR87_RS07630 0.11 -2.4
1,616,474 + ABZR87_RS07630 0.16 +0.9
1,616,474 + ABZR87_RS07630 0.16 +1.3
1,616,474 + ABZR87_RS07630 0.16 -3.1
1,616,474 + ABZR87_RS07630 0.16 -0.1
1,616,475 - ABZR87_RS07630 0.16 +0.3
1,616,594 + ABZR87_RS07630 0.26 -1.0
1,616,708 - ABZR87_RS07630 0.36 -2.0
1,616,783 + ABZR87_RS07630 0.43 -0.0
1,616,783 + ABZR87_RS07630 0.43 +0.2
1,616,783 + ABZR87_RS07630 0.43 -2.9
1,616,784 - ABZR87_RS07630 0.43 +0.5
1,616,784 - ABZR87_RS07630 0.43 -0.7
1,616,784 - ABZR87_RS07630 0.43 +0.0
1,616,784 - ABZR87_RS07630 0.43 +1.0
1,616,867 - ABZR87_RS07630 0.50 -0.5
1,616,870 + ABZR87_RS07630 0.50 +0.3
1,616,871 - ABZR87_RS07630 0.50 +0.8
1,616,895 - ABZR87_RS07630 0.52 +0.6

Or see this region's nucleotide sequence