Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07085

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07075 and ABZR87_RS07080 are separated by 4 nucleotidesABZR87_RS07080 and ABZR87_RS07085 are separated by 15 nucleotidesABZR87_RS07085 and ABZR87_RS07090 are separated by 305 nucleotides ABZR87_RS07075: ABZR87_RS07075 - LPS export ABC transporter periplasmic protein LptC, at 1,493,377 to 1,494,009 _RS07075 ABZR87_RS07080: ABZR87_RS07080 - HAD family hydrolase, at 1,494,014 to 1,494,610 _RS07080 ABZR87_RS07085: ABZR87_RS07085 - KpsF/GutQ family sugar-phosphate isomerase, at 1,494,626 to 1,495,609 _RS07085 ABZR87_RS07090: ABZR87_RS07090 - monovalent cation:proton antiporter family protein, at 1,495,915 to 1,497,894 _RS07090 Position (kb) 1494 1495 1496Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1494.061 kb on - strandat 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.235 kb on - strand, within ABZR87_RS07080at 1494.235 kb on - strand, within ABZR87_RS07080at 1494.235 kb on - strand, within ABZR87_RS07080at 1494.313 kb on - strand, within ABZR87_RS07080at 1494.313 kb on - strand, within ABZR87_RS07080at 1494.313 kb on - strand, within ABZR87_RS07080at 1494.313 kb on - strand, within ABZR87_RS07080at 1495.605 kb on - strandat 1495.621 kb on - strandat 1495.621 kb on - strandat 1495.621 kb on - strandat 1495.621 kb on - strandat 1495.621 kb on - strandat 1495.621 kb on - strandat 1495.621 kb on - strandat 1495.621 kb on - strandat 1495.621 kb on - strandat 1495.621 kb on - strandat 1495.622 kb on + strandat 1495.622 kb on + strandat 1495.802 kb on + strandat 1495.802 kb on + strandat 1495.802 kb on + strandat 1495.803 kb on - strandat 1495.803 kb on - strandat 1495.803 kb on - strandat 1495.803 kb on - strandat 1495.803 kb on - strandat 1495.804 kb on + strandat 1495.804 kb on + strandat 1495.804 kb on + strandat 1495.804 kb on + strandat 1495.805 kb on - strandat 1495.805 kb on - strandat 1496.011 kb on + strandat 1496.011 kb on + strandat 1496.011 kb on + strandat 1496.011 kb on + strandat 1496.011 kb on + strandat 1496.012 kb on - strandat 1496.012 kb on - strandat 1496.012 kb on - strandat 1496.012 kb on - strandat 1496.080 kb on + strandat 1496.081 kb on - strandat 1496.081 kb on - strandat 1496.081 kb on - strandat 1496.246 kb on - strand, within ABZR87_RS07090at 1496.451 kb on - strand, within ABZR87_RS07090at 1496.451 kb on - strand, within ABZR87_RS07090at 1496.451 kb on - strand, within ABZR87_RS07090

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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1,494,061 - +0.3
1,494,136 - ABZR87_RS07080 0.20 +1.9
1,494,136 - ABZR87_RS07080 0.20 -0.0
1,494,136 - ABZR87_RS07080 0.20 +0.2
1,494,136 - ABZR87_RS07080 0.20 -0.2
1,494,136 - ABZR87_RS07080 0.20 +1.2
1,494,136 - ABZR87_RS07080 0.20 +1.0
1,494,235 - ABZR87_RS07080 0.37 -0.8
1,494,235 - ABZR87_RS07080 0.37 -0.1
1,494,235 - ABZR87_RS07080 0.37 +0.0
1,494,313 - ABZR87_RS07080 0.50 +0.6
1,494,313 - ABZR87_RS07080 0.50 +1.0
1,494,313 - ABZR87_RS07080 0.50 +0.1
1,494,313 - ABZR87_RS07080 0.50 -0.5
1,495,605 - +3.1
1,495,621 - -0.1
1,495,621 - -1.5
1,495,621 - +0.9
1,495,621 - -1.5
1,495,621 - +0.3
1,495,621 - -2.5
1,495,621 - -0.3
1,495,621 - -2.2
1,495,621 - -0.6
1,495,621 - -2.5
1,495,622 + -2.7
1,495,622 + +0.9
1,495,802 + +0.7
1,495,802 + -0.1
1,495,802 + -1.3
1,495,803 - -2.4
1,495,803 - +2.0
1,495,803 - -0.6
1,495,803 - -0.8
1,495,803 - +0.6
1,495,804 + +0.3
1,495,804 + +0.6
1,495,804 + -2.0
1,495,804 + +0.8
1,495,805 - -0.1
1,495,805 - -0.5
1,496,011 + -2.2
1,496,011 + +0.0
1,496,011 + -0.9
1,496,011 + -1.3
1,496,011 + +0.0
1,496,012 - +0.0
1,496,012 - -2.1
1,496,012 - +0.3
1,496,012 - -3.9
1,496,080 + -0.8
1,496,081 - -1.5
1,496,081 - -0.1
1,496,081 - +0.0
1,496,246 - ABZR87_RS07090 0.17 -4.3
1,496,451 - ABZR87_RS07090 0.27 -2.6
1,496,451 - ABZR87_RS07090 0.27 +0.5
1,496,451 - ABZR87_RS07090 0.27 -1.3

Or see this region's nucleotide sequence