Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07070

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS07060 and ABZR87_RS07065 are separated by 96 nucleotidesABZR87_RS07065 and ABZR87_RS07070 are separated by 30 nucleotidesABZR87_RS07070 and ABZR87_RS07075 are separated by 59 nucleotidesABZR87_RS07075 and ABZR87_RS07080 are separated by 4 nucleotides ABZR87_RS07060: ABZR87_RS07060 - RNA polymerase factor sigma-54, at 1,490,303 to 1,491,814 _RS07060 ABZR87_RS07065: ABZR87_RS07065 - LPS export ABC transporter ATP-binding protein, at 1,491,911 to 1,492,699 _RS07065 ABZR87_RS07070: ABZR87_RS07070 - lipopolysaccharide transport periplasmic protein LptA, at 1,492,730 to 1,493,317 _RS07070 ABZR87_RS07075: ABZR87_RS07075 - LPS export ABC transporter periplasmic protein LptC, at 1,493,377 to 1,494,009 _RS07075 ABZR87_RS07080: ABZR87_RS07080 - HAD family hydrolase, at 1,494,014 to 1,494,610 _RS07080 Position (kb) 1492 1493 1494Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1491.821 kb on + strandat 1491.822 kb on - strandat 1491.822 kb on - strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.826 kb on + strandat 1491.827 kb on - strandat 1491.888 kb on - strandat 1491.894 kb on + strandat 1491.894 kb on + strandat 1491.894 kb on + strandat 1491.912 kb on + strandat 1491.912 kb on + strandat 1491.912 kb on + strandat 1491.912 kb on + strandat 1491.912 kb on + strandat 1491.913 kb on - strandat 1491.913 kb on - strandat 1492.700 kb on - strandat 1493.378 kb on + strandat 1494.061 kb on - strandat 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.136 kb on - strand, within ABZR87_RS07080at 1494.235 kb on - strand, within ABZR87_RS07080at 1494.235 kb on - strand, within ABZR87_RS07080at 1494.235 kb on - strand, within ABZR87_RS07080at 1494.313 kb on - strand, within ABZR87_RS07080at 1494.313 kb on - strand, within ABZR87_RS07080at 1494.313 kb on - strand, within ABZR87_RS07080at 1494.313 kb on - strand, within ABZR87_RS07080

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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1,491,821 + -0.1
1,491,822 - +1.6
1,491,822 - +0.1
1,491,826 + +0.3
1,491,826 + -2.0
1,491,826 + +0.2
1,491,826 + -1.5
1,491,826 + +2.2
1,491,826 + -3.2
1,491,826 + -0.2
1,491,826 + -2.3
1,491,827 - +1.3
1,491,888 - -3.2
1,491,894 + +0.7
1,491,894 + +0.6
1,491,894 + -0.8
1,491,912 + -0.3
1,491,912 + -0.5
1,491,912 + +0.9
1,491,912 + +0.5
1,491,912 + -1.0
1,491,913 - +0.4
1,491,913 - +0.6
1,492,700 - +2.6
1,493,378 + -0.0
1,494,061 - +0.3
1,494,136 - ABZR87_RS07080 0.20 +1.9
1,494,136 - ABZR87_RS07080 0.20 -0.0
1,494,136 - ABZR87_RS07080 0.20 +0.2
1,494,136 - ABZR87_RS07080 0.20 -0.2
1,494,136 - ABZR87_RS07080 0.20 +1.2
1,494,136 - ABZR87_RS07080 0.20 +1.0
1,494,235 - ABZR87_RS07080 0.37 -0.8
1,494,235 - ABZR87_RS07080 0.37 -0.1
1,494,235 - ABZR87_RS07080 0.37 +0.0
1,494,313 - ABZR87_RS07080 0.50 +0.6
1,494,313 - ABZR87_RS07080 0.50 +1.0
1,494,313 - ABZR87_RS07080 0.50 +0.1
1,494,313 - ABZR87_RS07080 0.50 -0.5

Or see this region's nucleotide sequence