Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06605

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06600 and ABZR87_RS06605 are separated by 90 nucleotidesABZR87_RS06605 and ABZR87_RS06610 are separated by 20 nucleotides ABZR87_RS06600: ABZR87_RS06600 - transcriptional regulator GcvA, at 1,405,033 to 1,405,995 _RS06600 ABZR87_RS06605: ABZR87_RS06605 - YbeD family protein, at 1,406,086 to 1,406,385 _RS06605 ABZR87_RS06610: ABZR87_RS06610 - D-alanyl-D-alanine carboxypeptidase family protein, at 1,406,406 to 1,407,608 _RS06610 Position (kb) 1406 1407Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1405.105 kb on + strandat 1405.105 kb on + strandat 1405.106 kb on - strandat 1405.252 kb on + strand, within ABZR87_RS06600at 1405.252 kb on + strand, within ABZR87_RS06600at 1405.252 kb on + strand, within ABZR87_RS06600at 1405.252 kb on + strand, within ABZR87_RS06600at 1405.252 kb on + strand, within ABZR87_RS06600at 1405.253 kb on - strand, within ABZR87_RS06600at 1405.384 kb on - strand, within ABZR87_RS06600at 1405.501 kb on + strand, within ABZR87_RS06600at 1405.501 kb on + strand, within ABZR87_RS06600at 1405.501 kb on + strand, within ABZR87_RS06600at 1405.502 kb on - strand, within ABZR87_RS06600at 1405.513 kb on + strand, within ABZR87_RS06600at 1405.514 kb on - strand, within ABZR87_RS06600at 1405.514 kb on - strand, within ABZR87_RS06600at 1405.514 kb on - strand, within ABZR87_RS06600at 1405.514 kb on - strand, within ABZR87_RS06600at 1405.749 kb on + strand, within ABZR87_RS06600at 1405.750 kb on - strand, within ABZR87_RS06600at 1405.750 kb on - strand, within ABZR87_RS06600at 1405.843 kb on + strand, within ABZR87_RS06600at 1405.843 kb on + strand, within ABZR87_RS06600at 1405.843 kb on + strand, within ABZR87_RS06600at 1405.843 kb on + strand, within ABZR87_RS06600at 1405.843 kb on + strand, within ABZR87_RS06600at 1405.843 kb on + strand, within ABZR87_RS06600at 1405.844 kb on - strand, within ABZR87_RS06600at 1405.844 kb on - strand, within ABZR87_RS06600at 1405.844 kb on - strand, within ABZR87_RS06600at 1405.844 kb on - strand, within ABZR87_RS06600at 1405.844 kb on - strand, within ABZR87_RS06600at 1405.846 kb on + strand, within ABZR87_RS06600at 1405.847 kb on - strand, within ABZR87_RS06600at 1405.847 kb on - strand, within ABZR87_RS06600at 1405.847 kb on - strand, within ABZR87_RS06600at 1405.847 kb on - strand, within ABZR87_RS06600at 1405.847 kb on - strand, within ABZR87_RS06600at 1406.087 kb on + strandat 1406.088 kb on - strandat 1406.088 kb on - strandat 1406.393 kb on + strandat 1406.394 kb on - strandat 1406.394 kb on - strandat 1406.407 kb on + strandat 1406.407 kb on + strandat 1406.407 kb on + strandat 1406.408 kb on - strandat 1406.408 kb on - strandat 1406.408 kb on - strandat 1406.408 kb on - strandat 1406.439 kb on + strandat 1406.441 kb on + strandat 1406.454 kb on - strandat 1406.680 kb on + strand, within ABZR87_RS06610at 1406.680 kb on + strand, within ABZR87_RS06610at 1406.681 kb on - strand, within ABZR87_RS06610at 1406.681 kb on - strand, within ABZR87_RS06610at 1406.716 kb on + strand, within ABZR87_RS06610at 1406.717 kb on - strand, within ABZR87_RS06610at 1406.717 kb on - strand, within ABZR87_RS06610at 1406.717 kb on - strand, within ABZR87_RS06610at 1406.748 kb on + strand, within ABZR87_RS06610at 1406.749 kb on + strand, within ABZR87_RS06610at 1406.749 kb on + strand, within ABZR87_RS06610at 1406.749 kb on + strand, within ABZR87_RS06610at 1406.749 kb on + strand, within ABZR87_RS06610at 1406.749 kb on + strand, within ABZR87_RS06610at 1406.749 kb on + strand, within ABZR87_RS06610at 1406.749 kb on + strand, within ABZR87_RS06610at 1406.750 kb on - strand, within ABZR87_RS06610at 1406.750 kb on - strand, within ABZR87_RS06610at 1406.750 kb on - strand, within ABZR87_RS06610at 1406.750 kb on - strand, within ABZR87_RS06610at 1406.750 kb on - strand, within ABZR87_RS06610at 1406.750 kb on - strand, within ABZR87_RS06610at 1406.969 kb on + strand, within ABZR87_RS06610at 1406.969 kb on + strand, within ABZR87_RS06610at 1406.969 kb on + strand, within ABZR87_RS06610at 1406.969 kb on + strand, within ABZR87_RS06610at 1406.969 kb on + strand, within ABZR87_RS06610at 1406.969 kb on + strand, within ABZR87_RS06610at 1406.969 kb on + strand, within ABZR87_RS06610at 1406.969 kb on + strand, within ABZR87_RS06610at 1406.970 kb on - strand, within ABZR87_RS06610at 1406.970 kb on - strand, within ABZR87_RS06610at 1406.970 kb on - strand, within ABZR87_RS06610at 1406.970 kb on - strand, within ABZR87_RS06610at 1406.970 kb on - strand, within ABZR87_RS06610at 1406.970 kb on - strand, within ABZR87_RS06610at 1406.970 kb on - strand, within ABZR87_RS06610at 1406.970 kb on - strand, within ABZR87_RS06610at 1406.970 kb on - strand, within ABZR87_RS06610at 1406.970 kb on - strand, within ABZR87_RS06610at 1406.971 kb on + strand, within ABZR87_RS06610at 1406.971 kb on + strand, within ABZR87_RS06610at 1406.971 kb on + strand, within ABZR87_RS06610at 1406.971 kb on + strand, within ABZR87_RS06610at 1406.971 kb on + strand, within ABZR87_RS06610at 1406.972 kb on - strand, within ABZR87_RS06610at 1406.972 kb on - strand, within ABZR87_RS06610at 1406.972 kb on - strand, within ABZR87_RS06610at 1406.972 kb on - strand, within ABZR87_RS06610at 1406.981 kb on - strand, within ABZR87_RS06610at 1406.992 kb on + strand, within ABZR87_RS06610at 1407.001 kb on + strand, within ABZR87_RS06610at 1407.001 kb on + strand, within ABZR87_RS06610at 1407.002 kb on - strand, within ABZR87_RS06610at 1407.002 kb on - strand, within ABZR87_RS06610at 1407.002 kb on - strand, within ABZR87_RS06610at 1407.064 kb on + strand, within ABZR87_RS06610at 1407.064 kb on + strand, within ABZR87_RS06610at 1407.065 kb on - strand, within ABZR87_RS06610at 1407.065 kb on - strand, within ABZR87_RS06610at 1407.334 kb on + strand, within ABZR87_RS06610at 1407.334 kb on + strand, within ABZR87_RS06610at 1407.334 kb on + strand, within ABZR87_RS06610at 1407.335 kb on - strand, within ABZR87_RS06610at 1407.373 kb on + strand, within ABZR87_RS06610at 1407.373 kb on + strand, within ABZR87_RS06610at 1407.373 kb on + strand, within ABZR87_RS06610at 1407.374 kb on - strand, within ABZR87_RS06610at 1407.374 kb on - strand, within ABZR87_RS06610at 1407.374 kb on - strand, within ABZR87_RS06610

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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1,405,105 + -3.2
1,405,105 + +0.7
1,405,106 - +0.5
1,405,252 + ABZR87_RS06600 0.23 +1.1
1,405,252 + ABZR87_RS06600 0.23 -1.1
1,405,252 + ABZR87_RS06600 0.23 -1.3
1,405,252 + ABZR87_RS06600 0.23 -3.5
1,405,252 + ABZR87_RS06600 0.23 +0.7
1,405,253 - ABZR87_RS06600 0.23 -0.5
1,405,384 - ABZR87_RS06600 0.36 +1.0
1,405,501 + ABZR87_RS06600 0.49 +0.4
1,405,501 + ABZR87_RS06600 0.49 -2.2
1,405,501 + ABZR87_RS06600 0.49 +0.9
1,405,502 - ABZR87_RS06600 0.49 -2.8
1,405,513 + ABZR87_RS06600 0.50 +1.3
1,405,514 - ABZR87_RS06600 0.50 -0.1
1,405,514 - ABZR87_RS06600 0.50 +0.9
1,405,514 - ABZR87_RS06600 0.50 -2.9
1,405,514 - ABZR87_RS06600 0.50 -0.1
1,405,749 + ABZR87_RS06600 0.74 +0.3
1,405,750 - ABZR87_RS06600 0.74 -0.3
1,405,750 - ABZR87_RS06600 0.74 -4.1
1,405,843 + ABZR87_RS06600 0.84 -0.3
1,405,843 + ABZR87_RS06600 0.84 -0.5
1,405,843 + ABZR87_RS06600 0.84 +0.4
1,405,843 + ABZR87_RS06600 0.84 -3.9
1,405,843 + ABZR87_RS06600 0.84 +1.5
1,405,843 + ABZR87_RS06600 0.84 -0.7
1,405,844 - ABZR87_RS06600 0.84 -1.5
1,405,844 - ABZR87_RS06600 0.84 +2.2
1,405,844 - ABZR87_RS06600 0.84 +0.0
1,405,844 - ABZR87_RS06600 0.84 +0.4
1,405,844 - ABZR87_RS06600 0.84 -2.5
1,405,846 + ABZR87_RS06600 0.84 -1.0
1,405,847 - ABZR87_RS06600 0.85 +1.0
1,405,847 - ABZR87_RS06600 0.85 +0.9
1,405,847 - ABZR87_RS06600 0.85 +0.3
1,405,847 - ABZR87_RS06600 0.85 -0.5
1,405,847 - ABZR87_RS06600 0.85 -0.5
1,406,087 + -0.2
1,406,088 - +0.6
1,406,088 - -2.3
1,406,393 + +0.2
1,406,394 - -0.1
1,406,394 - +0.4
1,406,407 + +1.0
1,406,407 + -0.5
1,406,407 + -0.5
1,406,408 - -4.0
1,406,408 - +0.3
1,406,408 - +1.9
1,406,408 - +1.1
1,406,439 + +1.5
1,406,441 + -0.4
1,406,454 - +0.4
1,406,680 + ABZR87_RS06610 0.23 +0.9
1,406,680 + ABZR87_RS06610 0.23 +0.1
1,406,681 - ABZR87_RS06610 0.23 +1.3
1,406,681 - ABZR87_RS06610 0.23 +0.9
1,406,716 + ABZR87_RS06610 0.26 +0.6
1,406,717 - ABZR87_RS06610 0.26 -1.3
1,406,717 - ABZR87_RS06610 0.26 -2.6
1,406,717 - ABZR87_RS06610 0.26 +0.1
1,406,748 + ABZR87_RS06610 0.28 -0.8
1,406,749 + ABZR87_RS06610 0.29 +1.0
1,406,749 + ABZR87_RS06610 0.29 +1.6
1,406,749 + ABZR87_RS06610 0.29 -1.1
1,406,749 + ABZR87_RS06610 0.29 +0.5
1,406,749 + ABZR87_RS06610 0.29 +1.3
1,406,749 + ABZR87_RS06610 0.29 +0.2
1,406,749 + ABZR87_RS06610 0.29 +0.6
1,406,750 - ABZR87_RS06610 0.29 +1.3
1,406,750 - ABZR87_RS06610 0.29 +0.8
1,406,750 - ABZR87_RS06610 0.29 +0.2
1,406,750 - ABZR87_RS06610 0.29 -2.5
1,406,750 - ABZR87_RS06610 0.29 +0.2
1,406,750 - ABZR87_RS06610 0.29 +1.6
1,406,969 + ABZR87_RS06610 0.47 -0.3
1,406,969 + ABZR87_RS06610 0.47 +1.3
1,406,969 + ABZR87_RS06610 0.47 +0.1
1,406,969 + ABZR87_RS06610 0.47 +0.8
1,406,969 + ABZR87_RS06610 0.47 +0.4
1,406,969 + ABZR87_RS06610 0.47 -0.5
1,406,969 + ABZR87_RS06610 0.47 +1.0
1,406,969 + ABZR87_RS06610 0.47 -0.1
1,406,970 - ABZR87_RS06610 0.47 +0.9
1,406,970 - ABZR87_RS06610 0.47 +2.1
1,406,970 - ABZR87_RS06610 0.47 +0.9
1,406,970 - ABZR87_RS06610 0.47 +0.7
1,406,970 - ABZR87_RS06610 0.47 -0.6
1,406,970 - ABZR87_RS06610 0.47 +0.7
1,406,970 - ABZR87_RS06610 0.47 -0.5
1,406,970 - ABZR87_RS06610 0.47 -0.1
1,406,970 - ABZR87_RS06610 0.47 +0.6
1,406,970 - ABZR87_RS06610 0.47 -3.1
1,406,971 + ABZR87_RS06610 0.47 +0.8
1,406,971 + ABZR87_RS06610 0.47 +1.1
1,406,971 + ABZR87_RS06610 0.47 +1.1
1,406,971 + ABZR87_RS06610 0.47 -1.3
1,406,971 + ABZR87_RS06610 0.47 +0.3
1,406,972 - ABZR87_RS06610 0.47 -0.1
1,406,972 - ABZR87_RS06610 0.47 +1.0
1,406,972 - ABZR87_RS06610 0.47 +0.8
1,406,972 - ABZR87_RS06610 0.47 +1.9
1,406,981 - ABZR87_RS06610 0.48 +0.2
1,406,992 + ABZR87_RS06610 0.49 -0.4
1,407,001 + ABZR87_RS06610 0.49 +0.0
1,407,001 + ABZR87_RS06610 0.49 +0.9
1,407,002 - ABZR87_RS06610 0.50 +2.0
1,407,002 - ABZR87_RS06610 0.50 +0.9
1,407,002 - ABZR87_RS06610 0.50 -3.0
1,407,064 + ABZR87_RS06610 0.55 -1.2
1,407,064 + ABZR87_RS06610 0.55 +1.5
1,407,065 - ABZR87_RS06610 0.55 +0.5
1,407,065 - ABZR87_RS06610 0.55 +1.0
1,407,334 + ABZR87_RS06610 0.77 +1.5
1,407,334 + ABZR87_RS06610 0.77 +1.1
1,407,334 + ABZR87_RS06610 0.77 -1.2
1,407,335 - ABZR87_RS06610 0.77 +2.5
1,407,373 + ABZR87_RS06610 0.80 +0.6
1,407,373 + ABZR87_RS06610 0.80 -2.4
1,407,373 + ABZR87_RS06610 0.80 +1.5
1,407,374 - ABZR87_RS06610 0.80 +0.6
1,407,374 - ABZR87_RS06610 0.80 +2.2
1,407,374 - ABZR87_RS06610 0.80 +1.4

Or see this region's nucleotide sequence