Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06150

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06140 and ABZR87_RS06145 overlap by 1 nucleotidesABZR87_RS06145 and ABZR87_RS06150 are separated by 181 nucleotidesABZR87_RS06150 and ABZR87_RS06155 are separated by 22 nucleotides ABZR87_RS06140: ABZR87_RS06140 - GNAT family N-acetyltransferase, at 1,309,448 to 1,309,987 _RS06140 ABZR87_RS06145: ABZR87_RS06145 - XRE family transcriptional regulator, at 1,309,987 to 1,310,571 _RS06145 ABZR87_RS06150: ABZR87_RS06150 - NADP-dependent oxidoreductase, at 1,310,753 to 1,311,784 _RS06150 ABZR87_RS06155: ABZR87_RS06155 - DUF1254 domain-containing protein, at 1,311,807 to 1,313,279 _RS06155 Position (kb) 1310 1311 1312Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1310.063 kb on + strand, within ABZR87_RS06145at 1310.063 kb on + strand, within ABZR87_RS06145at 1310.064 kb on - strand, within ABZR87_RS06145at 1310.205 kb on - strand, within ABZR87_RS06145at 1310.205 kb on - strand, within ABZR87_RS06145at 1310.205 kb on - strand, within ABZR87_RS06145at 1310.288 kb on + strand, within ABZR87_RS06145at 1310.289 kb on - strand, within ABZR87_RS06145at 1310.289 kb on - strand, within ABZR87_RS06145at 1310.554 kb on - strandat 1310.554 kb on - strandat 1310.554 kb on - strandat 1310.583 kb on + strandat 1310.584 kb on - strandat 1310.601 kb on - strandat 1310.601 kb on - strandat 1310.631 kb on + strandat 1310.631 kb on + strandat 1310.631 kb on + strandat 1310.632 kb on - strandat 1310.646 kb on + strandat 1310.646 kb on + strandat 1310.647 kb on - strandat 1310.688 kb on + strandat 1310.688 kb on + strandat 1310.688 kb on + strandat 1310.689 kb on - strandat 1310.689 kb on - strandat 1310.884 kb on + strand, within ABZR87_RS06150at 1310.885 kb on - strand, within ABZR87_RS06150at 1310.885 kb on - strand, within ABZR87_RS06150at 1310.891 kb on + strand, within ABZR87_RS06150at 1310.891 kb on + strand, within ABZR87_RS06150at 1310.891 kb on + strand, within ABZR87_RS06150at 1310.891 kb on + strand, within ABZR87_RS06150at 1310.891 kb on + strand, within ABZR87_RS06150at 1310.892 kb on - strand, within ABZR87_RS06150at 1310.892 kb on - strand, within ABZR87_RS06150at 1310.892 kb on - strand, within ABZR87_RS06150at 1310.909 kb on + strand, within ABZR87_RS06150at 1310.909 kb on + strand, within ABZR87_RS06150at 1310.909 kb on + strand, within ABZR87_RS06150at 1310.909 kb on + strand, within ABZR87_RS06150at 1310.909 kb on + strand, within ABZR87_RS06150at 1310.909 kb on + strand, within ABZR87_RS06150at 1310.910 kb on - strand, within ABZR87_RS06150at 1310.910 kb on - strand, within ABZR87_RS06150at 1310.910 kb on - strand, within ABZR87_RS06150at 1310.910 kb on - strand, within ABZR87_RS06150at 1310.910 kb on - strand, within ABZR87_RS06150at 1310.986 kb on + strand, within ABZR87_RS06150at 1310.986 kb on + strand, within ABZR87_RS06150at 1311.068 kb on + strand, within ABZR87_RS06150at 1311.068 kb on + strand, within ABZR87_RS06150at 1311.068 kb on + strand, within ABZR87_RS06150at 1311.069 kb on - strand, within ABZR87_RS06150at 1311.069 kb on - strand, within ABZR87_RS06150at 1311.069 kb on - strand, within ABZR87_RS06150at 1311.109 kb on + strand, within ABZR87_RS06150at 1311.164 kb on + strand, within ABZR87_RS06150at 1311.164 kb on + strand, within ABZR87_RS06150at 1311.164 kb on + strand, within ABZR87_RS06150at 1311.164 kb on + strand, within ABZR87_RS06150at 1311.165 kb on - strand, within ABZR87_RS06150at 1311.165 kb on - strand, within ABZR87_RS06150at 1311.317 kb on + strand, within ABZR87_RS06150at 1311.416 kb on + strand, within ABZR87_RS06150at 1311.509 kb on + strand, within ABZR87_RS06150at 1311.509 kb on + strand, within ABZR87_RS06150at 1311.510 kb on - strand, within ABZR87_RS06150at 1311.510 kb on - strand, within ABZR87_RS06150at 1311.808 kb on + strandat 1311.834 kb on + strandat 1311.835 kb on - strandat 1312.138 kb on + strand, within ABZR87_RS06155at 1312.138 kb on + strand, within ABZR87_RS06155at 1312.138 kb on + strand, within ABZR87_RS06155at 1312.138 kb on + strand, within ABZR87_RS06155at 1312.139 kb on - strand, within ABZR87_RS06155at 1312.139 kb on - strand, within ABZR87_RS06155at 1312.139 kb on - strand, within ABZR87_RS06155at 1312.255 kb on + strand, within ABZR87_RS06155at 1312.513 kb on + strand, within ABZR87_RS06155at 1312.513 kb on + strand, within ABZR87_RS06155at 1312.513 kb on + strand, within ABZR87_RS06155at 1312.513 kb on + strand, within ABZR87_RS06155at 1312.514 kb on - strand, within ABZR87_RS06155

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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1,310,063 + ABZR87_RS06145 0.13 -0.3
1,310,063 + ABZR87_RS06145 0.13 +0.7
1,310,064 - ABZR87_RS06145 0.13 +1.4
1,310,205 - ABZR87_RS06145 0.37 -0.5
1,310,205 - ABZR87_RS06145 0.37 -0.5
1,310,205 - ABZR87_RS06145 0.37 -0.3
1,310,288 + ABZR87_RS06145 0.51 +0.0
1,310,289 - ABZR87_RS06145 0.52 +0.9
1,310,289 - ABZR87_RS06145 0.52 -0.5
1,310,554 - +1.9
1,310,554 - -2.5
1,310,554 - +1.0
1,310,583 + -0.4
1,310,584 - +0.2
1,310,601 - -1.2
1,310,601 - +0.6
1,310,631 + -4.1
1,310,631 + +1.4
1,310,631 + -2.6
1,310,632 - -0.3
1,310,646 + +1.0
1,310,646 + -0.1
1,310,647 - +1.0
1,310,688 + +0.5
1,310,688 + -3.1
1,310,688 + -1.8
1,310,689 - -3.1
1,310,689 - -0.4
1,310,884 + ABZR87_RS06150 0.13 +1.0
1,310,885 - ABZR87_RS06150 0.13 -3.2
1,310,885 - ABZR87_RS06150 0.13 -2.8
1,310,891 + ABZR87_RS06150 0.13 -1.0
1,310,891 + ABZR87_RS06150 0.13 -0.7
1,310,891 + ABZR87_RS06150 0.13 -0.5
1,310,891 + ABZR87_RS06150 0.13 +1.8
1,310,891 + ABZR87_RS06150 0.13 +0.7
1,310,892 - ABZR87_RS06150 0.13 -1.4
1,310,892 - ABZR87_RS06150 0.13 -2.2
1,310,892 - ABZR87_RS06150 0.13 -1.5
1,310,909 + ABZR87_RS06150 0.15 -1.3
1,310,909 + ABZR87_RS06150 0.15 +0.9
1,310,909 + ABZR87_RS06150 0.15 +0.6
1,310,909 + ABZR87_RS06150 0.15 -3.2
1,310,909 + ABZR87_RS06150 0.15 +0.5
1,310,909 + ABZR87_RS06150 0.15 -2.9
1,310,910 - ABZR87_RS06150 0.15 +0.6
1,310,910 - ABZR87_RS06150 0.15 +0.8
1,310,910 - ABZR87_RS06150 0.15 -3.0
1,310,910 - ABZR87_RS06150 0.15 +0.7
1,310,910 - ABZR87_RS06150 0.15 -2.6
1,310,986 + ABZR87_RS06150 0.23 -2.4
1,310,986 + ABZR87_RS06150 0.23 -3.3
1,311,068 + ABZR87_RS06150 0.31 -1.7
1,311,068 + ABZR87_RS06150 0.31 -2.2
1,311,068 + ABZR87_RS06150 0.31 -1.5
1,311,069 - ABZR87_RS06150 0.31 -1.4
1,311,069 - ABZR87_RS06150 0.31 -1.7
1,311,069 - ABZR87_RS06150 0.31 -1.9
1,311,109 + ABZR87_RS06150 0.34 -0.2
1,311,164 + ABZR87_RS06150 0.40 +1.4
1,311,164 + ABZR87_RS06150 0.40 +1.1
1,311,164 + ABZR87_RS06150 0.40 -0.6
1,311,164 + ABZR87_RS06150 0.40 +0.6
1,311,165 - ABZR87_RS06150 0.40 +0.7
1,311,165 - ABZR87_RS06150 0.40 -0.9
1,311,317 + ABZR87_RS06150 0.55 -0.5
1,311,416 + ABZR87_RS06150 0.64 -0.4
1,311,509 + ABZR87_RS06150 0.73 +0.8
1,311,509 + ABZR87_RS06150 0.73 -0.8
1,311,510 - ABZR87_RS06150 0.73 -0.7
1,311,510 - ABZR87_RS06150 0.73 -0.6
1,311,808 + +0.0
1,311,834 + +1.3
1,311,835 - +0.8
1,312,138 + ABZR87_RS06155 0.22 +3.5
1,312,138 + ABZR87_RS06155 0.22 +0.1
1,312,138 + ABZR87_RS06155 0.22 +1.3
1,312,138 + ABZR87_RS06155 0.22 +1.3
1,312,139 - ABZR87_RS06155 0.23 +0.8
1,312,139 - ABZR87_RS06155 0.23 +0.5
1,312,139 - ABZR87_RS06155 0.23 +0.5
1,312,255 + ABZR87_RS06155 0.30 +0.5
1,312,513 + ABZR87_RS06155 0.48 +1.2
1,312,513 + ABZR87_RS06155 0.48 -0.2
1,312,513 + ABZR87_RS06155 0.48 -1.1
1,312,513 + ABZR87_RS06155 0.48 -2.2
1,312,514 - ABZR87_RS06155 0.48 -1.1

Or see this region's nucleotide sequence