Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06090

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06085 and ABZR87_RS06090 are separated by 12 nucleotidesABZR87_RS06090 and ABZR87_RS06095 overlap by 11 nucleotides ABZR87_RS06085: ABZR87_RS06085 - GntR family transcriptional regulator, at 1,300,071 to 1,300,793 _RS06085 ABZR87_RS06090: ABZR87_RS06090 - YoaK family protein, at 1,300,806 to 1,301,513 _RS06090 ABZR87_RS06095: ABZR87_RS06095 - amidohydrolase, at 1,301,503 to 1,303,341 _RS06095 Position (kb) 1300 1301 1302Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1299.812 kb on + strandat 1299.812 kb on + strandat 1299.866 kb on + strandat 1299.867 kb on - strandat 1299.907 kb on + strandat 1299.907 kb on + strandat 1299.907 kb on + strandat 1299.907 kb on + strandat 1299.907 kb on + strandat 1299.908 kb on - strandat 1299.908 kb on - strandat 1299.908 kb on - strandat 1299.908 kb on - strandat 1299.908 kb on - strandat 1299.908 kb on - strandat 1300.059 kb on + strandat 1300.082 kb on + strandat 1300.083 kb on - strandat 1300.152 kb on + strand, within ABZR87_RS06085at 1300.152 kb on + strand, within ABZR87_RS06085at 1300.153 kb on - strand, within ABZR87_RS06085at 1300.153 kb on - strand, within ABZR87_RS06085at 1300.153 kb on - strand, within ABZR87_RS06085at 1300.210 kb on + strand, within ABZR87_RS06085at 1300.210 kb on + strand, within ABZR87_RS06085at 1300.210 kb on + strand, within ABZR87_RS06085at 1300.210 kb on + strand, within ABZR87_RS06085at 1300.210 kb on + strand, within ABZR87_RS06085at 1300.210 kb on + strand, within ABZR87_RS06085at 1300.211 kb on - strand, within ABZR87_RS06085at 1300.211 kb on - strand, within ABZR87_RS06085at 1300.211 kb on - strand, within ABZR87_RS06085at 1300.211 kb on - strand, within ABZR87_RS06085at 1300.211 kb on - strand, within ABZR87_RS06085at 1300.211 kb on - strand, within ABZR87_RS06085at 1300.211 kb on - strand, within ABZR87_RS06085at 1300.211 kb on - strand, within ABZR87_RS06085at 1300.229 kb on + strand, within ABZR87_RS06085at 1300.229 kb on + strand, within ABZR87_RS06085at 1300.230 kb on - strand, within ABZR87_RS06085at 1300.230 kb on - strand, within ABZR87_RS06085at 1300.230 kb on - strand, within ABZR87_RS06085at 1300.230 kb on - strand, within ABZR87_RS06085at 1300.596 kb on + strand, within ABZR87_RS06085at 1300.596 kb on + strand, within ABZR87_RS06085at 1300.597 kb on - strand, within ABZR87_RS06085at 1300.597 kb on - strand, within ABZR87_RS06085at 1300.597 kb on - strand, within ABZR87_RS06085at 1300.597 kb on - strand, within ABZR87_RS06085at 1300.713 kb on + strand, within ABZR87_RS06085at 1300.713 kb on + strand, within ABZR87_RS06085at 1300.713 kb on + strand, within ABZR87_RS06085at 1300.713 kb on + strand, within ABZR87_RS06085at 1300.713 kb on + strand, within ABZR87_RS06085at 1300.713 kb on + strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.714 kb on - strand, within ABZR87_RS06085at 1300.807 kb on + strandat 1300.970 kb on + strand, within ABZR87_RS06090at 1300.971 kb on - strand, within ABZR87_RS06090at 1300.984 kb on - strand, within ABZR87_RS06090at 1300.984 kb on - strand, within ABZR87_RS06090at 1301.419 kb on + strand, within ABZR87_RS06090at 1301.419 kb on + strand, within ABZR87_RS06090at 1301.420 kb on - strand, within ABZR87_RS06090at 1301.916 kb on - strand, within ABZR87_RS06095at 1301.916 kb on - strand, within ABZR87_RS06095at 1301.916 kb on - strand, within ABZR87_RS06095at 1301.954 kb on + strand, within ABZR87_RS06095at 1301.996 kb on + strand, within ABZR87_RS06095at 1301.996 kb on + strand, within ABZR87_RS06095at 1301.997 kb on - strand, within ABZR87_RS06095at 1302.017 kb on + strand, within ABZR87_RS06095at 1302.017 kb on + strand, within ABZR87_RS06095at 1302.131 kb on + strand, within ABZR87_RS06095at 1302.131 kb on + strand, within ABZR87_RS06095at 1302.131 kb on + strand, within ABZR87_RS06095at 1302.132 kb on - strand, within ABZR87_RS06095at 1302.132 kb on - strand, within ABZR87_RS06095at 1302.311 kb on + strand, within ABZR87_RS06095at 1302.311 kb on + strand, within ABZR87_RS06095at 1302.311 kb on + strand, within ABZR87_RS06095at 1302.495 kb on - strand, within ABZR87_RS06095

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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1,299,812 + +0.3
1,299,812 + +1.1
1,299,866 + -1.5
1,299,867 - +1.2
1,299,907 + -1.9
1,299,907 + +0.2
1,299,907 + -2.5
1,299,907 + -0.1
1,299,907 + -2.8
1,299,908 - +1.0
1,299,908 - -2.7
1,299,908 - +0.5
1,299,908 - -0.5
1,299,908 - -4.2
1,299,908 - -2.5
1,300,059 + +1.2
1,300,082 + -0.3
1,300,083 - -1.3
1,300,152 + ABZR87_RS06085 0.11 -0.2
1,300,152 + ABZR87_RS06085 0.11 -0.4
1,300,153 - ABZR87_RS06085 0.11 -2.6
1,300,153 - ABZR87_RS06085 0.11 +1.0
1,300,153 - ABZR87_RS06085 0.11 -0.9
1,300,210 + ABZR87_RS06085 0.19 +0.8
1,300,210 + ABZR87_RS06085 0.19 +1.7
1,300,210 + ABZR87_RS06085 0.19 -0.6
1,300,210 + ABZR87_RS06085 0.19 +0.2
1,300,210 + ABZR87_RS06085 0.19 -0.3
1,300,210 + ABZR87_RS06085 0.19 -2.1
1,300,211 - ABZR87_RS06085 0.19 +0.2
1,300,211 - ABZR87_RS06085 0.19 -1.0
1,300,211 - ABZR87_RS06085 0.19 +1.1
1,300,211 - ABZR87_RS06085 0.19 -2.4
1,300,211 - ABZR87_RS06085 0.19 -1.7
1,300,211 - ABZR87_RS06085 0.19 -1.0
1,300,211 - ABZR87_RS06085 0.19 +0.3
1,300,211 - ABZR87_RS06085 0.19 +0.4
1,300,229 + ABZR87_RS06085 0.22 +1.4
1,300,229 + ABZR87_RS06085 0.22 -0.3
1,300,230 - ABZR87_RS06085 0.22 -2.8
1,300,230 - ABZR87_RS06085 0.22 +0.3
1,300,230 - ABZR87_RS06085 0.22 +0.1
1,300,230 - ABZR87_RS06085 0.22 -3.0
1,300,596 + ABZR87_RS06085 0.73 -0.1
1,300,596 + ABZR87_RS06085 0.73 -0.5
1,300,597 - ABZR87_RS06085 0.73 +1.2
1,300,597 - ABZR87_RS06085 0.73 +0.8
1,300,597 - ABZR87_RS06085 0.73 +1.5
1,300,597 - ABZR87_RS06085 0.73 -4.5
1,300,713 + ABZR87_RS06085 0.89 -3.3
1,300,713 + ABZR87_RS06085 0.89 +1.8
1,300,713 + ABZR87_RS06085 0.89 +0.4
1,300,713 + ABZR87_RS06085 0.89 +1.0
1,300,713 + ABZR87_RS06085 0.89 +1.4
1,300,713 + ABZR87_RS06085 0.89 +0.9
1,300,714 - ABZR87_RS06085 0.89 -0.2
1,300,714 - ABZR87_RS06085 0.89 +0.1
1,300,714 - ABZR87_RS06085 0.89 +0.4
1,300,714 - ABZR87_RS06085 0.89 -0.5
1,300,714 - ABZR87_RS06085 0.89 -0.1
1,300,714 - ABZR87_RS06085 0.89 -0.4
1,300,714 - ABZR87_RS06085 0.89 +0.6
1,300,714 - ABZR87_RS06085 0.89 +0.1
1,300,714 - ABZR87_RS06085 0.89 -0.1
1,300,807 + -1.3
1,300,970 + ABZR87_RS06090 0.23 -3.1
1,300,971 - ABZR87_RS06090 0.23 +1.7
1,300,984 - ABZR87_RS06090 0.25 -1.2
1,300,984 - ABZR87_RS06090 0.25 +1.2
1,301,419 + ABZR87_RS06090 0.87 +0.8
1,301,419 + ABZR87_RS06090 0.87 -0.1
1,301,420 - ABZR87_RS06090 0.87 +1.5
1,301,916 - ABZR87_RS06095 0.22 +1.4
1,301,916 - ABZR87_RS06095 0.22 -0.2
1,301,916 - ABZR87_RS06095 0.22 -0.5
1,301,954 + ABZR87_RS06095 0.25 -3.5
1,301,996 + ABZR87_RS06095 0.27 +1.3
1,301,996 + ABZR87_RS06095 0.27 +1.2
1,301,997 - ABZR87_RS06095 0.27 +0.6
1,302,017 + ABZR87_RS06095 0.28 -0.8
1,302,017 + ABZR87_RS06095 0.28 -0.2
1,302,131 + ABZR87_RS06095 0.34 -2.4
1,302,131 + ABZR87_RS06095 0.34 +2.0
1,302,131 + ABZR87_RS06095 0.34 +0.3
1,302,132 - ABZR87_RS06095 0.34 -0.1
1,302,132 - ABZR87_RS06095 0.34 -0.7
1,302,311 + ABZR87_RS06095 0.44 +0.3
1,302,311 + ABZR87_RS06095 0.44 -2.1
1,302,311 + ABZR87_RS06095 0.44 -0.1
1,302,495 - ABZR87_RS06095 0.54 -0.2

Or see this region's nucleotide sequence