Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04230

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04225 and ABZR87_RS04230 are separated by 75 nucleotidesABZR87_RS04230 and ABZR87_RS04235 overlap by 4 nucleotides ABZR87_RS04225: ABZR87_RS04225 - alpha/beta hydrolase, at 883,245 to 884,114 _RS04225 ABZR87_RS04230: ABZR87_RS04230 - Cu(I)-responsive transcriptional regulator, at 884,190 to 884,648 _RS04230 ABZR87_RS04235: ABZR87_RS04235 - heavy metal translocating P-type ATPase, at 884,645 to 886,867 _RS04235 Position (kb) 884 885Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 883.203 kb on + strandat 883.203 kb on + strandat 883.378 kb on + strand, within ABZR87_RS04225at 883.378 kb on + strand, within ABZR87_RS04225at 883.379 kb on - strand, within ABZR87_RS04225at 883.381 kb on - strand, within ABZR87_RS04225at 883.827 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.831 kb on + strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 883.832 kb on - strand, within ABZR87_RS04225at 884.149 kb on + strandat 884.150 kb on - strandat 884.150 kb on - strandat 884.500 kb on + strand, within ABZR87_RS04230at 884.500 kb on + strand, within ABZR87_RS04230at 884.500 kb on + strand, within ABZR87_RS04230at 884.500 kb on + strand, within ABZR87_RS04230at 884.501 kb on - strand, within ABZR87_RS04230at 884.501 kb on - strand, within ABZR87_RS04230at 884.501 kb on - strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.509 kb on + strand, within ABZR87_RS04230at 884.510 kb on - strand, within ABZR87_RS04230at 884.510 kb on - strand, within ABZR87_RS04230at 884.557 kb on + strand, within ABZR87_RS04230at 884.557 kb on + strand, within ABZR87_RS04230at 884.557 kb on + strand, within ABZR87_RS04230at 884.557 kb on + strand, within ABZR87_RS04230at 884.558 kb on - strand, within ABZR87_RS04230at 884.558 kb on - strand, within ABZR87_RS04230at 884.560 kb on + strand, within ABZR87_RS04230at 884.560 kb on + strand, within ABZR87_RS04230at 884.561 kb on - strand, within ABZR87_RS04230at 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.787 kb on + strandat 884.788 kb on - strandat 884.788 kb on - strandat 884.788 kb on - strandat 884.788 kb on - strandat 884.788 kb on - strandat 884.788 kb on - strandat 885.357 kb on - strand, within ABZR87_RS04235at 885.357 kb on - strand, within ABZR87_RS04235at 885.444 kb on + strand, within ABZR87_RS04235at 885.445 kb on - strand, within ABZR87_RS04235at 885.445 kb on - strand, within ABZR87_RS04235at 885.571 kb on + strand, within ABZR87_RS04235at 885.571 kb on + strand, within ABZR87_RS04235at 885.572 kb on - strand, within ABZR87_RS04235

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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883,203 + -2.2
883,203 + -0.4
883,378 + ABZR87_RS04225 0.15 +1.0
883,378 + ABZR87_RS04225 0.15 -3.6
883,379 - ABZR87_RS04225 0.15 -0.0
883,381 - ABZR87_RS04225 0.16 +0.7
883,827 + ABZR87_RS04225 0.67 -4.4
883,831 + ABZR87_RS04225 0.67 +0.2
883,831 + ABZR87_RS04225 0.67 -2.9
883,831 + ABZR87_RS04225 0.67 -1.7
883,831 + ABZR87_RS04225 0.67 +1.5
883,831 + ABZR87_RS04225 0.67 -3.6
883,832 - ABZR87_RS04225 0.67 +1.1
883,832 - ABZR87_RS04225 0.67 -3.0
883,832 - ABZR87_RS04225 0.67 -0.3
883,832 - ABZR87_RS04225 0.67 +1.8
883,832 - ABZR87_RS04225 0.67 -0.8
884,149 + +0.7
884,150 - +0.4
884,150 - +0.1
884,500 + ABZR87_RS04230 0.68 +1.6
884,500 + ABZR87_RS04230 0.68 +0.0
884,500 + ABZR87_RS04230 0.68 -0.5
884,500 + ABZR87_RS04230 0.68 +0.2
884,501 - ABZR87_RS04230 0.68 -0.2
884,501 - ABZR87_RS04230 0.68 +0.4
884,501 - ABZR87_RS04230 0.68 +0.5
884,509 + ABZR87_RS04230 0.69 -0.3
884,509 + ABZR87_RS04230 0.69 -1.1
884,509 + ABZR87_RS04230 0.69 +0.6
884,509 + ABZR87_RS04230 0.69 +0.1
884,509 + ABZR87_RS04230 0.69 -0.9
884,510 - ABZR87_RS04230 0.70 +2.1
884,510 - ABZR87_RS04230 0.70 -0.4
884,557 + ABZR87_RS04230 0.80 -2.0
884,557 + ABZR87_RS04230 0.80 -0.4
884,557 + ABZR87_RS04230 0.80 +1.0
884,557 + ABZR87_RS04230 0.80 +1.1
884,558 - ABZR87_RS04230 0.80 -1.4
884,558 - ABZR87_RS04230 0.80 -0.9
884,560 + ABZR87_RS04230 0.81 +0.7
884,560 + ABZR87_RS04230 0.81 +1.1
884,561 - ABZR87_RS04230 0.81 +0.1
884,787 + -3.0
884,787 + -2.8
884,787 + -0.0
884,787 + +0.2
884,787 + +1.4
884,787 + +0.5
884,787 + +0.5
884,787 + +0.4
884,787 + +1.0
884,787 + -0.9
884,787 + +0.2
884,788 - -0.0
884,788 - -1.3
884,788 - +0.4
884,788 - +0.4
884,788 - -0.8
884,788 - -0.9
885,357 - ABZR87_RS04235 0.32 +0.7
885,357 - ABZR87_RS04235 0.32 +0.2
885,444 + ABZR87_RS04235 0.36 -1.1
885,445 - ABZR87_RS04235 0.36 -0.2
885,445 - ABZR87_RS04235 0.36 -1.4
885,571 + ABZR87_RS04235 0.42 -0.8
885,571 + ABZR87_RS04235 0.42 +0.9
885,572 - ABZR87_RS04235 0.42 +0.9

Or see this region's nucleotide sequence