Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS03610

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS03600 and ABZR87_RS03605 are separated by 111 nucleotidesABZR87_RS03605 and ABZR87_RS03610 are separated by 173 nucleotidesABZR87_RS03610 and ABZR87_RS03615 are separated by 189 nucleotidesABZR87_RS03615 and ABZR87_RS03620 are separated by 33 nucleotides ABZR87_RS03600: ABZR87_RS03600 - chaperonin GroEL, at 755,894 to 757,516 _RS03600 ABZR87_RS03605: ABZR87_RS03605 - co-chaperone GroES, at 757,628 to 757,945 _RS03605 ABZR87_RS03610: ABZR87_RS03610 - hypothetical protein, at 758,119 to 758,760 _RS03610 ABZR87_RS03615: ABZR87_RS03615 - Hsp20/alpha crystallin family protein, at 758,950 to 759,393 _RS03615 ABZR87_RS03620: ABZR87_RS03620 - Hsp20/alpha crystallin family protein, at 759,427 to 759,846 _RS03620 Position (kb) 758 759Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 757.439 kb on - strandat 757.471 kb on + strandat 757.472 kb on - strandat 757.472 kb on - strandat 757.532 kb on + strandat 757.737 kb on + strand, within ABZR87_RS03605at 757.737 kb on + strand, within ABZR87_RS03605at 757.738 kb on - strand, within ABZR87_RS03605at 757.738 kb on - strand, within ABZR87_RS03605at 757.926 kb on + strandat 757.926 kb on + strandat 757.926 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.963 kb on + strandat 757.964 kb on - strandat 757.964 kb on - strandat 757.964 kb on - strandat 757.964 kb on - strandat 757.964 kb on - strandat 758.059 kb on + strandat 758.059 kb on + strandat 758.108 kb on - strandat 758.156 kb on + strandat 758.163 kb on + strandat 758.315 kb on + strand, within ABZR87_RS03610at 758.315 kb on + strand, within ABZR87_RS03610at 758.316 kb on - strand, within ABZR87_RS03610at 758.316 kb on - strand, within ABZR87_RS03610at 758.399 kb on + strand, within ABZR87_RS03610at 758.399 kb on + strand, within ABZR87_RS03610at 758.400 kb on - strand, within ABZR87_RS03610at 758.670 kb on + strand, within ABZR87_RS03610at 758.670 kb on + strand, within ABZR87_RS03610at 758.670 kb on - strand, within ABZR87_RS03610at 758.671 kb on - strand, within ABZR87_RS03610at 758.779 kb on - strandat 758.814 kb on + strandat 758.814 kb on + strandat 758.819 kb on + strandat 758.819 kb on + strandat 758.820 kb on - strandat 758.820 kb on - strandat 758.907 kb on + strandat 758.907 kb on + strandat 758.908 kb on - strandat 758.908 kb on - strandat 758.908 kb on - strandat 758.908 kb on - strandat 759.232 kb on + strand, within ABZR87_RS03615at 759.233 kb on - strand, within ABZR87_RS03615at 759.233 kb on - strand, within ABZR87_RS03615at 759.233 kb on - strand, within ABZR87_RS03615at 759.316 kb on + strand, within ABZR87_RS03615at 759.316 kb on + strand, within ABZR87_RS03615at 759.316 kb on + strand, within ABZR87_RS03615at 759.316 kb on + strand, within ABZR87_RS03615at 759.316 kb on + strand, within ABZR87_RS03615at 759.317 kb on - strand, within ABZR87_RS03615at 759.317 kb on - strand, within ABZR87_RS03615at 759.317 kb on - strand, within ABZR87_RS03615at 759.317 kb on - strand, within ABZR87_RS03615

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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757,439 - -0.6
757,471 + +0.3
757,472 - +0.7
757,472 - -3.2
757,532 + +0.5
757,737 + ABZR87_RS03605 0.34 +2.0
757,737 + ABZR87_RS03605 0.34 -2.7
757,738 - ABZR87_RS03605 0.35 +0.5
757,738 - ABZR87_RS03605 0.35 +0.5
757,926 + +0.5
757,926 + -0.0
757,926 + -1.0
757,963 + -2.6
757,963 + -0.1
757,963 + +0.5
757,963 + +0.3
757,963 + +0.4
757,963 + +0.8
757,963 + -2.0
757,963 + +0.1
757,964 - +1.4
757,964 - -1.3
757,964 - -1.7
757,964 - +1.0
757,964 - +0.9
758,059 + -1.7
758,059 + +1.0
758,108 - -3.3
758,156 + -0.8
758,163 + +0.2
758,315 + ABZR87_RS03610 0.31 +0.9
758,315 + ABZR87_RS03610 0.31 +0.9
758,316 - ABZR87_RS03610 0.31 +0.9
758,316 - ABZR87_RS03610 0.31 +0.6
758,399 + ABZR87_RS03610 0.44 -1.1
758,399 + ABZR87_RS03610 0.44 +0.9
758,400 - ABZR87_RS03610 0.44 -0.6
758,670 + ABZR87_RS03610 0.86 +0.3
758,670 + ABZR87_RS03610 0.86 -2.5
758,670 - ABZR87_RS03610 0.86 -2.0
758,671 - ABZR87_RS03610 0.86 +2.0
758,779 - +0.8
758,814 + +1.1
758,814 + -0.0
758,819 + -4.1
758,819 + +0.9
758,820 - +0.7
758,820 - -0.0
758,907 + -0.6
758,907 + +0.3
758,908 - +0.8
758,908 - -0.7
758,908 - +0.3
758,908 - -1.1
759,232 + ABZR87_RS03615 0.64 -2.0
759,233 - ABZR87_RS03615 0.64 -3.8
759,233 - ABZR87_RS03615 0.64 -1.4
759,233 - ABZR87_RS03615 0.64 -3.5
759,316 + ABZR87_RS03615 0.82 +0.7
759,316 + ABZR87_RS03615 0.82 +0.7
759,316 + ABZR87_RS03615 0.82 +1.6
759,316 + ABZR87_RS03615 0.82 +0.4
759,316 + ABZR87_RS03615 0.82 -1.7
759,317 - ABZR87_RS03615 0.83 -3.5
759,317 - ABZR87_RS03615 0.83 -0.8
759,317 - ABZR87_RS03615 0.83 -2.9
759,317 - ABZR87_RS03615 0.83 +0.8

Or see this region's nucleotide sequence