Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03395 and ABZR87_RS03400 are separated by 219 nucleotides ABZR87_RS03400 and ABZR87_RS03405 are separated by 147 nucleotides ABZR87_RS03405 and ABZR87_RS03410 are separated by 175 nucleotides ABZR87_RS03410 and ABZR87_RS03415 are separated by 32 nucleotides
ABZR87_RS03395: ABZR87_RS03395 - 4-hydroxyphenylpyruvate dioxygenase, at 709,792 to 710,898
_RS03395
ABZR87_RS03400: ABZR87_RS03400 - EF-hand domain-containing protein, at 711,118 to 711,735
_RS03400
ABZR87_RS03405: ABZR87_RS03405 - type II secretion system protein N, at 711,883 to 712,566
_RS03405
ABZR87_RS03410: ABZR87_RS03410 - type II secretion system major pseudopilin GspG, at 712,742 to 713,212
_RS03410
ABZR87_RS03415: ABZR87_RS03415 - GspH/FimT family pseudopilin, at 713,245 to 713,757
_RS03415
Position (kb) 711
712
713 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 710.924 kb on + strand at 710.962 kb on - strand at 711.047 kb on + strand at 711.048 kb on - strand at 711.066 kb on + strand at 711.097 kb on + strand at 711.097 kb on + strand at 711.171 kb on + strand at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.212 kb on + strand, within ABZR87_RS03400 at 711.213 kb on - strand, within ABZR87_RS03400 at 711.213 kb on - strand, within ABZR87_RS03400 at 711.213 kb on - strand, within ABZR87_RS03400 at 711.213 kb on - strand, within ABZR87_RS03400 at 711.213 kb on - strand, within ABZR87_RS03400 at 711.764 kb on - strand at 711.764 kb on - strand at 711.771 kb on + strand at 711.771 kb on + strand at 711.772 kb on - strand at 711.772 kb on - strand at 711.772 kb on - strand at 711.805 kb on + strand at 711.805 kb on + strand at 711.806 kb on - strand at 711.806 kb on - strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.835 kb on + strand at 711.836 kb on - strand at 711.836 kb on - strand at 711.836 kb on - strand at 711.836 kb on - strand at 711.836 kb on - strand at 711.838 kb on + strand at 711.839 kb on - strand at 711.839 kb on - strand at 711.839 kb on - strand at 711.839 kb on - strand at 711.839 kb on - strand at 711.839 kb on - strand at 711.839 kb on - strand at 711.884 kb on + strand at 711.884 kb on + strand at 711.884 kb on + strand at 711.884 kb on + strand at 711.884 kb on + strand at 711.885 kb on - strand at 711.885 kb on - strand at 711.885 kb on - strand at 711.885 kb on - strand at 711.910 kb on - strand at 711.990 kb on + strand, within ABZR87_RS03405 at 711.990 kb on + strand, within ABZR87_RS03405 at 711.990 kb on + strand, within ABZR87_RS03405 at 711.991 kb on - strand, within ABZR87_RS03405 at 711.991 kb on - strand, within ABZR87_RS03405 at 711.991 kb on - strand, within ABZR87_RS03405 at 711.991 kb on - strand, within ABZR87_RS03405 at 712.528 kb on + strand at 712.528 kb on + strand at 712.528 kb on + strand at 712.528 kb on + strand at 712.528 kb on + strand at 712.528 kb on + strand at 712.528 kb on + strand at 712.529 kb on - strand at 712.529 kb on - strand at 712.529 kb on - strand at 712.529 kb on - strand at 712.529 kb on - strand at 712.529 kb on - strand at 712.529 kb on - strand at 712.586 kb on + strand at 712.587 kb on - strand at 712.587 kb on - strand at 712.587 kb on - strand at 712.587 kb on - strand at 712.587 kb on - strand at 712.587 kb on - strand at 712.592 kb on + strand at 712.593 kb on - strand at 712.593 kb on - strand at 712.603 kb on + strand at 712.603 kb on + strand at 712.650 kb on + strand at 712.651 kb on - strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.682 kb on + strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.683 kb on - strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.684 kb on + strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.685 kb on - strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.692 kb on + strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.693 kb on - strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.703 kb on + strand at 712.704 kb on - strand at 712.704 kb on - strand at 712.704 kb on - strand at 712.704 kb on - strand at 712.704 kb on - strand at 712.704 kb on - strand at 712.704 kb on - strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.705 kb on + strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.706 kb on - strand at 712.723 kb on + strand at 712.723 kb on + strand at 712.724 kb on - strand at 712.724 kb on - strand at 712.850 kb on - strand, within ABZR87_RS03410 at 712.955 kb on + strand, within ABZR87_RS03410 at 712.955 kb on + strand, within ABZR87_RS03410 at 712.956 kb on - strand, within ABZR87_RS03410 at 712.956 kb on - strand, within ABZR87_RS03410 at 712.956 kb on - strand, within ABZR87_RS03410 at 712.956 kb on - strand, within ABZR87_RS03410 at 713.061 kb on - strand, within ABZR87_RS03410 at 713.061 kb on - strand, within ABZR87_RS03410 at 713.061 kb on - strand, within ABZR87_RS03410 at 713.100 kb on - strand, within ABZR87_RS03410 at 713.100 kb on - strand, within ABZR87_RS03410 at 713.105 kb on + strand, within ABZR87_RS03410 at 713.105 kb on + strand, within ABZR87_RS03410 at 713.105 kb on + strand, within ABZR87_RS03410 at 713.106 kb on - strand, within ABZR87_RS03410 at 713.106 kb on - strand, within ABZR87_RS03410 at 713.106 kb on - strand, within ABZR87_RS03410 at 713.142 kb on + strand, within ABZR87_RS03410 at 713.210 kb on + strand at 713.210 kb on + strand at 713.210 kb on + strand at 713.210 kb on + strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.211 kb on - strand at 713.304 kb on + strand, within ABZR87_RS03415 at 713.304 kb on + strand, within ABZR87_RS03415 at 713.305 kb on - strand, within ABZR87_RS03415 at 713.305 kb on - strand, within ABZR87_RS03415 at 713.506 kb on + strand, within ABZR87_RS03415 at 713.506 kb on + strand, within ABZR87_RS03415 at 713.507 kb on - strand, within ABZR87_RS03415 at 713.507 kb on - strand, within ABZR87_RS03415
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 710,924 + -0.7 710,962 - -4.2 711,047 + -2.1 711,048 - +1.7 711,066 + -2.3 711,097 + -3.1 711,097 + -3.5 711,171 + -2.3 711,212 + ABZR87_RS03400 0.15 +0.0 711,212 + ABZR87_RS03400 0.15 -0.5 711,212 + ABZR87_RS03400 0.15 +0.3 711,212 + ABZR87_RS03400 0.15 -0.3 711,212 + ABZR87_RS03400 0.15 -0.7 711,212 + ABZR87_RS03400 0.15 -0.3 711,212 + ABZR87_RS03400 0.15 +0.7 711,212 + ABZR87_RS03400 0.15 +0.6 711,213 - ABZR87_RS03400 0.15 -1.5 711,213 - ABZR87_RS03400 0.15 -0.3 711,213 - ABZR87_RS03400 0.15 -2.9 711,213 - ABZR87_RS03400 0.15 +2.1 711,213 - ABZR87_RS03400 0.15 -0.7 711,764 - +0.8 711,764 - +1.2 711,771 + -1.3 711,771 + +0.9 711,772 - -0.3 711,772 - +0.4 711,772 - -1.0 711,805 + +0.2 711,805 + +1.1 711,806 - -0.8 711,806 - -1.4 711,835 + -0.6 711,835 + +0.4 711,835 + +0.9 711,835 + -0.1 711,835 + +0.0 711,835 + -3.2 711,835 + +0.3 711,835 + -0.6 711,835 + +1.8 711,835 + +1.8 711,836 - +0.3 711,836 - -1.4 711,836 - -1.1 711,836 - +1.5 711,836 - +1.0 711,838 + +0.8 711,839 - -0.9 711,839 - -0.5 711,839 - -1.0 711,839 - +0.8 711,839 - -0.9 711,839 - -1.6 711,839 - +2.8 711,884 + +2.2 711,884 + -0.0 711,884 + -0.9 711,884 + +1.8 711,884 + -2.3 711,885 - +0.2 711,885 - -2.8 711,885 - -1.9 711,885 - -0.6 711,910 - -1.3 711,990 + ABZR87_RS03405 0.16 +0.9 711,990 + ABZR87_RS03405 0.16 +2.2 711,990 + ABZR87_RS03405 0.16 +1.4 711,991 - ABZR87_RS03405 0.16 -4.1 711,991 - ABZR87_RS03405 0.16 +0.7 711,991 - ABZR87_RS03405 0.16 +0.4 711,991 - ABZR87_RS03405 0.16 -2.9 712,528 + -0.5 712,528 + -1.2 712,528 + -2.9 712,528 + -1.3 712,528 + +0.3 712,528 + -3.5 712,528 + +0.4 712,529 - +0.1 712,529 - +0.6 712,529 - -0.3 712,529 - +0.1 712,529 - +0.3 712,529 - -1.0 712,529 - -0.6 712,586 + +0.6 712,587 - +0.4 712,587 - +0.2 712,587 - -1.4 712,587 - +0.9 712,587 - -0.9 712,587 - +0.3 712,592 + -0.3 712,593 - -1.4 712,593 - -0.2 712,603 + +0.4 712,603 + +0.1 712,650 + -0.5 712,651 - -2.1 712,682 + -0.7 712,682 + +0.4 712,682 + -0.6 712,682 + +0.1 712,682 + -1.1 712,682 + -1.5 712,682 + +0.8 712,682 + -2.3 712,682 + +0.8 712,682 + -0.6 712,682 + +1.6 712,682 + +1.5 712,682 + +0.5 712,682 + -4.6 712,682 + -0.1 712,682 + -3.3 712,683 - +0.6 712,683 - +0.9 712,683 - -0.2 712,683 - +0.3 712,683 - -2.9 712,683 - -2.5 712,683 - -2.8 712,683 - +0.6 712,683 - +0.5 712,683 - +1.7 712,683 - -3.7 712,683 - +1.0 712,683 - +1.4 712,683 - -3.1 712,683 - -3.8 712,683 - -0.9 712,683 - +1.1 712,684 + -2.8 712,684 + -3.2 712,684 + -1.1 712,684 + -1.3 712,684 + -3.5 712,684 + -3.1 712,684 + +2.5 712,684 + +0.4 712,684 + +0.3 712,684 + -1.1 712,684 + -2.2 712,684 + +0.6 712,684 + +1.5 712,684 + +0.6 712,684 + +2.3 712,684 + +1.1 712,684 + +0.6 712,684 + +1.8 712,684 + +0.4 712,684 + -0.8 712,684 + -1.2 712,684 + +0.7 712,685 - -0.5 712,685 - -1.5 712,685 - -1.1 712,685 - +1.0 712,685 - -2.4 712,685 - +0.1 712,685 - +0.2 712,685 - -0.5 712,685 - -0.1 712,685 - +0.9 712,685 - -1.8 712,685 - -0.6 712,685 - +0.4 712,685 - +0.0 712,685 - -0.2 712,685 - +0.3 712,685 - +1.4 712,685 - -3.4 712,692 + -0.3 712,692 + +1.7 712,692 + +0.6 712,692 + +0.8 712,692 + -0.8 712,692 + -0.5 712,692 + -3.2 712,692 + -0.9 712,692 + +0.8 712,692 + +0.4 712,692 + +1.2 712,692 + +0.9 712,693 - -0.1 712,693 - -1.9 712,693 - +0.6 712,693 - +2.2 712,693 - +0.6 712,693 - +0.2 712,693 - +2.2 712,703 + -0.0 712,703 + +0.5 712,703 + +0.3 712,703 + -2.6 712,703 + -0.3 712,703 + +0.1 712,703 + +0.2 712,703 + -1.3 712,703 + -3.3 712,704 - -1.9 712,704 - +0.2 712,704 - +0.1 712,704 - -0.0 712,704 - -0.7 712,704 - +1.0 712,704 - +1.7 712,705 + +0.1 712,705 + -3.2 712,705 + +0.7 712,705 + +2.6 712,705 + -2.4 712,705 + -0.5 712,705 + -2.8 712,705 + -0.0 712,705 + +0.8 712,705 + -0.2 712,705 + +0.5 712,705 + +0.6 712,705 + -1.1 712,705 + +1.1 712,705 + +0.1 712,705 + +1.1 712,705 + -0.2 712,705 + -0.8 712,705 + -0.7 712,705 + +1.8 712,705 + -1.0 712,705 + -0.6 712,705 + -0.8 712,705 + +0.6 712,705 + -0.3 712,706 - +2.1 712,706 - -0.3 712,706 - -1.1 712,706 - -0.9 712,706 - +0.5 712,706 - +1.2 712,706 - -2.3 712,706 - -1.7 712,706 - -1.1 712,706 - -0.4 712,706 - +0.4 712,706 - +0.7 712,706 - -0.2 712,706 - -0.1 712,706 - +0.3 712,706 - -4.2 712,706 - -0.5 712,706 - -1.5 712,706 - +0.0 712,706 - +0.1 712,706 - +1.6 712,706 - +1.7 712,706 - -1.3 712,706 - -1.8 712,706 - -0.6 712,706 - -1.8 712,706 - +0.8 712,723 + -2.0 712,723 + -1.1 712,724 - -2.4 712,724 - +0.3 712,850 - ABZR87_RS03410 0.23 -0.6 712,955 + ABZR87_RS03410 0.45 +0.3 712,955 + ABZR87_RS03410 0.45 +1.0 712,956 - ABZR87_RS03410 0.45 -1.5 712,956 - ABZR87_RS03410 0.45 -0.9 712,956 - ABZR87_RS03410 0.45 +0.7 712,956 - ABZR87_RS03410 0.45 -2.2 713,061 - ABZR87_RS03410 0.68 -2.6 713,061 - ABZR87_RS03410 0.68 +0.1 713,061 - ABZR87_RS03410 0.68 -2.0 713,100 - ABZR87_RS03410 0.76 +0.7 713,100 - ABZR87_RS03410 0.76 +0.2 713,105 + ABZR87_RS03410 0.77 -1.5 713,105 + ABZR87_RS03410 0.77 -0.4 713,105 + ABZR87_RS03410 0.77 -0.4 713,106 - ABZR87_RS03410 0.77 -2.2 713,106 - ABZR87_RS03410 0.77 -2.1 713,106 - ABZR87_RS03410 0.77 -4.0 713,142 + ABZR87_RS03410 0.85 +1.2 713,210 + -2.3 713,210 + +3.7 713,210 + -1.6 713,210 + +0.1 713,211 - -0.8 713,211 - +1.6 713,211 - -2.6 713,211 - -0.4 713,211 - +1.7 713,211 - +2.1 713,211 - +1.9 713,304 + ABZR87_RS03415 0.12 -0.3 713,304 + ABZR87_RS03415 0.12 -1.1 713,305 - ABZR87_RS03415 0.12 -4.4 713,305 - ABZR87_RS03415 0.12 +0.3 713,506 + ABZR87_RS03415 0.51 -4.1 713,506 + ABZR87_RS03415 0.51 -3.6 713,507 - ABZR87_RS03415 0.51 +0.3 713,507 - ABZR87_RS03415 0.51 -0.8
Or see this region's nucleotide sequence