Experiment: Azelaic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02455 and ABZR87_RS02460 are separated by 31 nucleotides ABZR87_RS02460 and ABZR87_RS02465 overlap by 8 nucleotides ABZR87_RS02465 and ABZR87_RS02470 overlap by 4 nucleotides ABZR87_RS02470 and ABZR87_RS02475 are separated by 47 nucleotides ABZR87_RS02475 and ABZR87_RS02480 are separated by 75 nucleotides
ABZR87_RS02455: ABZR87_RS02455 - membrane protein, at 523,987 to 524,361
_RS02455
ABZR87_RS02460: ABZR87_RS02460 - phosphoribosyl-ATP diphosphatase, at 524,393 to 524,767
_RS02460
ABZR87_RS02465: ABZR87_RS02465 - phosphoribosyl-AMP cyclohydrolase, at 524,760 to 525,182
_RS02465
ABZR87_RS02470: ABZR87_RS02470 - imidazole glycerol phosphate synthase subunit HisF, at 525,179 to 525,955
_RS02470
ABZR87_RS02475: ABZR87_RS02475 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase, at 526,003 to 526,746
_RS02475
ABZR87_RS02480: ABZR87_RS02480 - imidazole glycerol phosphate synthase subunit HisH, at 526,822 to 527,475
_RS02480
Position (kb) 525
526 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.180 kb on + strand, within ABZR87_RS02455 at 524.181 kb on - strand, within ABZR87_RS02455 at 524.181 kb on - strand, within ABZR87_RS02455 at 524.181 kb on - strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.208 kb on + strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.209 kb on - strand, within ABZR87_RS02455 at 524.214 kb on - strand, within ABZR87_RS02455 at 524.214 kb on - strand, within ABZR87_RS02455 at 524.214 kb on - strand, within ABZR87_RS02455 at 524.244 kb on + strand, within ABZR87_RS02455 at 524.244 kb on + strand, within ABZR87_RS02455 at 524.279 kb on + strand, within ABZR87_RS02455 at 524.279 kb on + strand, within ABZR87_RS02455 at 524.280 kb on - strand, within ABZR87_RS02455 at 524.280 kb on - strand, within ABZR87_RS02455 at 524.286 kb on + strand, within ABZR87_RS02455 at 524.286 kb on + strand, within ABZR87_RS02455 at 524.287 kb on - strand, within ABZR87_RS02455 at 524.287 kb on - strand, within ABZR87_RS02455 at 524.351 kb on + strand at 524.351 kb on + strand at 524.351 kb on + strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.352 kb on - strand at 524.791 kb on + strand at 524.791 kb on + strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 524.792 kb on - strand at 525.182 kb on + strand at 525.183 kb on - strand at 525.195 kb on - strand at 525.950 kb on + strand at 525.950 kb on + strand at 525.950 kb on + strand at 526.746 kb on + strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.747 kb on - strand at 526.906 kb on - strand, within ABZR87_RS02480
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic (C) remove 524,180 + ABZR87_RS02455 0.51 +1.7 524,180 + ABZR87_RS02455 0.51 -1.9 524,180 + ABZR87_RS02455 0.51 -0.6 524,180 + ABZR87_RS02455 0.51 -0.6 524,181 - ABZR87_RS02455 0.52 -0.7 524,181 - ABZR87_RS02455 0.52 -1.9 524,181 - ABZR87_RS02455 0.52 +0.8 524,208 + ABZR87_RS02455 0.59 +1.3 524,208 + ABZR87_RS02455 0.59 -0.7 524,208 + ABZR87_RS02455 0.59 -1.3 524,208 + ABZR87_RS02455 0.59 -0.7 524,208 + ABZR87_RS02455 0.59 -3.6 524,208 + ABZR87_RS02455 0.59 +1.1 524,208 + ABZR87_RS02455 0.59 +0.9 524,208 + ABZR87_RS02455 0.59 +1.7 524,208 + ABZR87_RS02455 0.59 +1.5 524,209 - ABZR87_RS02455 0.59 +2.2 524,209 - ABZR87_RS02455 0.59 +1.7 524,209 - ABZR87_RS02455 0.59 -4.1 524,209 - ABZR87_RS02455 0.59 +2.4 524,214 - ABZR87_RS02455 0.61 -1.4 524,214 - ABZR87_RS02455 0.61 -1.8 524,214 - ABZR87_RS02455 0.61 -2.2 524,244 + ABZR87_RS02455 0.69 -2.6 524,244 + ABZR87_RS02455 0.69 +0.2 524,279 + ABZR87_RS02455 0.78 +0.9 524,279 + ABZR87_RS02455 0.78 -3.9 524,280 - ABZR87_RS02455 0.78 -0.6 524,280 - ABZR87_RS02455 0.78 -2.7 524,286 + ABZR87_RS02455 0.80 -2.4 524,286 + ABZR87_RS02455 0.80 -0.6 524,287 - ABZR87_RS02455 0.80 +1.7 524,287 - ABZR87_RS02455 0.80 -3.9 524,351 + -3.1 524,351 + +0.3 524,351 + -3.1 524,352 - +0.9 524,352 - -1.9 524,352 - -0.2 524,352 - +0.9 524,352 - -1.5 524,352 - +1.6 524,352 - -2.2 524,352 - +0.4 524,791 + -1.8 524,791 + -3.0 524,792 - +0.5 524,792 - +0.7 524,792 - -3.0 524,792 - +1.2 524,792 - -3.3 524,792 - +0.8 524,792 - -1.3 525,182 + -3.3 525,183 - -3.4 525,195 - +0.1 525,950 + -1.8 525,950 + -0.9 525,950 + -1.3 526,746 + -0.9 526,747 - -2.6 526,747 - +1.1 526,747 - -2.0 526,747 - +0.8 526,747 - -2.1 526,906 - ABZR87_RS02480 0.13 +1.7
Or see this region's nucleotide sequence