Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02135

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02125 and ABZR87_RS02130 are separated by 130 nucleotidesABZR87_RS02130 and ABZR87_RS02135 overlap by 4 nucleotidesABZR87_RS02135 and ABZR87_RS02140 are separated by 401 nucleotides ABZR87_RS02125: ABZR87_RS02125 - Co2+/Mg2+ efflux protein ApaG, at 456,767 to 457,141 _RS02125 ABZR87_RS02130: ABZR87_RS02130 - ribulose-phosphate 3-epimerase, at 457,272 to 458,000 _RS02130 ABZR87_RS02135: ABZR87_RS02135 - phosphoglycolate phosphatase, at 457,997 to 458,725 _RS02135 ABZR87_RS02140: ABZR87_RS02140 - anthranilate synthase component I, at 459,127 to 460,656 _RS02140 Position (kb) 457 458 459Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 457.053 kb on + strand, within ABZR87_RS02125at 457.053 kb on + strand, within ABZR87_RS02125at 457.053 kb on + strand, within ABZR87_RS02125at 457.053 kb on + strand, within ABZR87_RS02125at 457.054 kb on - strand, within ABZR87_RS02125at 457.054 kb on - strand, within ABZR87_RS02125at 457.065 kb on + strand, within ABZR87_RS02125at 457.065 kb on + strand, within ABZR87_RS02125at 457.066 kb on - strand, within ABZR87_RS02125at 457.102 kb on - strand, within ABZR87_RS02125at 457.102 kb on - strand, within ABZR87_RS02125at 457.131 kb on + strandat 457.132 kb on - strandat 457.132 kb on - strandat 457.154 kb on + strandat 457.154 kb on + strandat 457.154 kb on + strandat 457.154 kb on + strandat 457.155 kb on - strandat 457.155 kb on - strandat 457.155 kb on - strandat 457.155 kb on - strandat 457.227 kb on + strandat 457.227 kb on + strandat 457.227 kb on + strandat 457.227 kb on + strandat 457.228 kb on - strandat 457.228 kb on - strandat 457.228 kb on - strandat 458.153 kb on + strand, within ABZR87_RS02135at 458.153 kb on + strand, within ABZR87_RS02135at 458.153 kb on + strand, within ABZR87_RS02135at 458.153 kb on + strand, within ABZR87_RS02135at 458.153 kb on + strand, within ABZR87_RS02135at 458.154 kb on - strand, within ABZR87_RS02135at 458.154 kb on - strand, within ABZR87_RS02135at 458.154 kb on - strand, within ABZR87_RS02135at 458.154 kb on - strand, within ABZR87_RS02135at 458.154 kb on - strand, within ABZR87_RS02135at 458.154 kb on - strand, within ABZR87_RS02135at 458.252 kb on + strand, within ABZR87_RS02135at 458.252 kb on + strand, within ABZR87_RS02135at 458.252 kb on + strand, within ABZR87_RS02135at 458.253 kb on - strand, within ABZR87_RS02135at 458.253 kb on - strand, within ABZR87_RS02135at 458.253 kb on - strand, within ABZR87_RS02135at 458.253 kb on - strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.264 kb on + strand, within ABZR87_RS02135at 458.265 kb on - strand, within ABZR87_RS02135at 458.265 kb on - strand, within ABZR87_RS02135at 458.285 kb on + strand, within ABZR87_RS02135at 458.285 kb on + strand, within ABZR87_RS02135at 458.285 kb on + strand, within ABZR87_RS02135at 458.285 kb on + strand, within ABZR87_RS02135at 458.285 kb on + strand, within ABZR87_RS02135at 458.286 kb on - strand, within ABZR87_RS02135at 458.286 kb on - strand, within ABZR87_RS02135at 458.286 kb on - strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.289 kb on + strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.290 kb on - strand, within ABZR87_RS02135at 458.297 kb on + strand, within ABZR87_RS02135at 458.297 kb on + strand, within ABZR87_RS02135at 458.298 kb on - strand, within ABZR87_RS02135at 458.298 kb on - strand, within ABZR87_RS02135at 458.433 kb on - strand, within ABZR87_RS02135at 458.472 kb on - strand, within ABZR87_RS02135at 458.594 kb on + strand, within ABZR87_RS02135at 458.594 kb on + strand, within ABZR87_RS02135at 458.595 kb on - strand, within ABZR87_RS02135at 458.595 kb on - strand, within ABZR87_RS02135at 458.600 kb on + strand, within ABZR87_RS02135at 458.601 kb on - strand, within ABZR87_RS02135at 458.617 kb on + strand, within ABZR87_RS02135at 458.617 kb on + strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.618 kb on - strand, within ABZR87_RS02135at 458.619 kb on + strand, within ABZR87_RS02135at 458.619 kb on + strand, within ABZR87_RS02135at 458.619 kb on + strand, within ABZR87_RS02135at 458.620 kb on - strand, within ABZR87_RS02135at 458.620 kb on - strand, within ABZR87_RS02135at 458.620 kb on - strand, within ABZR87_RS02135at 458.620 kb on - strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.641 kb on + strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.642 kb on - strand, within ABZR87_RS02135at 458.643 kb on + strand, within ABZR87_RS02135at 458.644 kb on - strand, within ABZR87_RS02135at 458.644 kb on - strand, within ABZR87_RS02135at 458.644 kb on - strand, within ABZR87_RS02135at 458.817 kb on - strandat 458.990 kb on + strandat 458.990 kb on + strandat 458.991 kb on - strandat 458.991 kb on - strandat 459.026 kb on + strandat 459.026 kb on + strandat 459.027 kb on - strandat 459.166 kb on + strandat 459.166 kb on + strandat 459.167 kb on - strandat 459.167 kb on - strandat 459.227 kb on - strandat 459.310 kb on + strand, within ABZR87_RS02140at 459.310 kb on + strand, within ABZR87_RS02140at 459.310 kb on + strand, within ABZR87_RS02140at 459.311 kb on - strand, within ABZR87_RS02140at 459.500 kb on - strand, within ABZR87_RS02140at 459.500 kb on - strand, within ABZR87_RS02140at 459.509 kb on - strand, within ABZR87_RS02140at 459.509 kb on - strand, within ABZR87_RS02140at 459.525 kb on + strand, within ABZR87_RS02140at 459.525 kb on + strand, within ABZR87_RS02140at 459.525 kb on + strand, within ABZR87_RS02140at 459.526 kb on - strand, within ABZR87_RS02140at 459.637 kb on + strand, within ABZR87_RS02140at 459.637 kb on + strand, within ABZR87_RS02140at 459.638 kb on - strand, within ABZR87_RS02140at 459.638 kb on - strand, within ABZR87_RS02140at 459.638 kb on - strand, within ABZR87_RS02140at 459.638 kb on - strand, within ABZR87_RS02140at 459.649 kb on + strand, within ABZR87_RS02140at 459.649 kb on + strand, within ABZR87_RS02140at 459.677 kb on - strand, within ABZR87_RS02140at 459.677 kb on - strand, within ABZR87_RS02140at 459.677 kb on - strand, within ABZR87_RS02140at 459.677 kb on - strand, within ABZR87_RS02140

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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457,053 + ABZR87_RS02125 0.76 +0.7
457,053 + ABZR87_RS02125 0.76 +0.0
457,053 + ABZR87_RS02125 0.76 -3.6
457,053 + ABZR87_RS02125 0.76 -3.0
457,054 - ABZR87_RS02125 0.77 +0.2
457,054 - ABZR87_RS02125 0.77 +1.6
457,065 + ABZR87_RS02125 0.79 +1.5
457,065 + ABZR87_RS02125 0.79 -3.1
457,066 - ABZR87_RS02125 0.80 -0.6
457,102 - ABZR87_RS02125 0.89 -2.9
457,102 - ABZR87_RS02125 0.89 +0.8
457,131 + +0.2
457,132 - -0.3
457,132 - -2.1
457,154 + -3.7
457,154 + +0.4
457,154 + -1.7
457,154 + -0.2
457,155 - -3.5
457,155 - +0.8
457,155 - +0.4
457,155 - +1.0
457,227 + -1.4
457,227 + -1.4
457,227 + +0.2
457,227 + +1.4
457,228 - +3.1
457,228 - +0.6
457,228 - -1.7
458,153 + ABZR87_RS02135 0.21 -0.1
458,153 + ABZR87_RS02135 0.21 -3.8
458,153 + ABZR87_RS02135 0.21 +0.2
458,153 + ABZR87_RS02135 0.21 -0.6
458,153 + ABZR87_RS02135 0.21 -2.1
458,154 - ABZR87_RS02135 0.22 +1.6
458,154 - ABZR87_RS02135 0.22 +0.8
458,154 - ABZR87_RS02135 0.22 -0.3
458,154 - ABZR87_RS02135 0.22 -2.0
458,154 - ABZR87_RS02135 0.22 +1.1
458,154 - ABZR87_RS02135 0.22 +1.6
458,252 + ABZR87_RS02135 0.35 +1.6
458,252 + ABZR87_RS02135 0.35 +0.1
458,252 + ABZR87_RS02135 0.35 +0.4
458,253 - ABZR87_RS02135 0.35 +0.4
458,253 - ABZR87_RS02135 0.35 -2.6
458,253 - ABZR87_RS02135 0.35 +0.9
458,253 - ABZR87_RS02135 0.35 -1.4
458,264 + ABZR87_RS02135 0.37 +1.4
458,264 + ABZR87_RS02135 0.37 +1.5
458,264 + ABZR87_RS02135 0.37 -2.6
458,264 + ABZR87_RS02135 0.37 +1.4
458,264 + ABZR87_RS02135 0.37 +0.4
458,264 + ABZR87_RS02135 0.37 -0.2
458,264 + ABZR87_RS02135 0.37 -2.3
458,264 + ABZR87_RS02135 0.37 -0.3
458,265 - ABZR87_RS02135 0.37 +0.2
458,265 - ABZR87_RS02135 0.37 -0.4
458,285 + ABZR87_RS02135 0.40 +1.6
458,285 + ABZR87_RS02135 0.40 -0.2
458,285 + ABZR87_RS02135 0.40 -0.1
458,285 + ABZR87_RS02135 0.40 -0.3
458,285 + ABZR87_RS02135 0.40 +0.8
458,286 - ABZR87_RS02135 0.40 +0.1
458,286 - ABZR87_RS02135 0.40 -0.5
458,286 - ABZR87_RS02135 0.40 -0.6
458,289 + ABZR87_RS02135 0.40 -1.1
458,289 + ABZR87_RS02135 0.40 +0.4
458,289 + ABZR87_RS02135 0.40 +0.9
458,289 + ABZR87_RS02135 0.40 +1.4
458,289 + ABZR87_RS02135 0.40 +1.4
458,289 + ABZR87_RS02135 0.40 -1.0
458,289 + ABZR87_RS02135 0.40 +1.1
458,289 + ABZR87_RS02135 0.40 -2.5
458,289 + ABZR87_RS02135 0.40 +0.4
458,289 + ABZR87_RS02135 0.40 -0.1
458,289 + ABZR87_RS02135 0.40 -2.9
458,290 - ABZR87_RS02135 0.40 -0.0
458,290 - ABZR87_RS02135 0.40 +0.1
458,290 - ABZR87_RS02135 0.40 +0.1
458,290 - ABZR87_RS02135 0.40 +0.8
458,290 - ABZR87_RS02135 0.40 +1.3
458,290 - ABZR87_RS02135 0.40 +0.7
458,290 - ABZR87_RS02135 0.40 +1.3
458,290 - ABZR87_RS02135 0.40 -0.3
458,290 - ABZR87_RS02135 0.40 -3.3
458,290 - ABZR87_RS02135 0.40 -0.7
458,290 - ABZR87_RS02135 0.40 -1.2
458,297 + ABZR87_RS02135 0.41 +1.8
458,297 + ABZR87_RS02135 0.41 -0.3
458,298 - ABZR87_RS02135 0.41 +0.5
458,298 - ABZR87_RS02135 0.41 +1.2
458,433 - ABZR87_RS02135 0.60 -1.5
458,472 - ABZR87_RS02135 0.65 +0.9
458,594 + ABZR87_RS02135 0.82 +1.5
458,594 + ABZR87_RS02135 0.82 -4.1
458,595 - ABZR87_RS02135 0.82 +0.0
458,595 - ABZR87_RS02135 0.82 +0.3
458,600 + ABZR87_RS02135 0.83 +0.3
458,601 - ABZR87_RS02135 0.83 -2.6
458,617 + ABZR87_RS02135 0.85 +1.2
458,617 + ABZR87_RS02135 0.85 +1.2
458,618 - ABZR87_RS02135 0.85 -0.3
458,618 - ABZR87_RS02135 0.85 +0.4
458,618 - ABZR87_RS02135 0.85 +0.9
458,618 - ABZR87_RS02135 0.85 -0.7
458,618 - ABZR87_RS02135 0.85 -0.6
458,618 - ABZR87_RS02135 0.85 +0.3
458,618 - ABZR87_RS02135 0.85 -3.5
458,618 - ABZR87_RS02135 0.85 -0.2
458,619 + ABZR87_RS02135 0.85 +1.7
458,619 + ABZR87_RS02135 0.85 -0.4
458,619 + ABZR87_RS02135 0.85 +0.8
458,620 - ABZR87_RS02135 0.85 +0.5
458,620 - ABZR87_RS02135 0.85 -0.1
458,620 - ABZR87_RS02135 0.85 -2.7
458,620 - ABZR87_RS02135 0.85 -0.5
458,641 + ABZR87_RS02135 0.88 +1.2
458,641 + ABZR87_RS02135 0.88 +0.3
458,641 + ABZR87_RS02135 0.88 +1.1
458,641 + ABZR87_RS02135 0.88 -3.0
458,641 + ABZR87_RS02135 0.88 -3.4
458,641 + ABZR87_RS02135 0.88 +1.3
458,641 + ABZR87_RS02135 0.88 +0.7
458,641 + ABZR87_RS02135 0.88 +0.8
458,641 + ABZR87_RS02135 0.88 -1.4
458,641 + ABZR87_RS02135 0.88 +0.5
458,641 + ABZR87_RS02135 0.88 +0.4
458,642 - ABZR87_RS02135 0.88 -3.0
458,642 - ABZR87_RS02135 0.88 -2.6
458,642 - ABZR87_RS02135 0.88 -0.3
458,642 - ABZR87_RS02135 0.88 -2.6
458,642 - ABZR87_RS02135 0.88 -0.5
458,642 - ABZR87_RS02135 0.88 -1.6
458,642 - ABZR87_RS02135 0.88 +0.9
458,642 - ABZR87_RS02135 0.88 -1.0
458,643 + ABZR87_RS02135 0.89 +0.2
458,644 - ABZR87_RS02135 0.89 -4.0
458,644 - ABZR87_RS02135 0.89 -2.4
458,644 - ABZR87_RS02135 0.89 -2.2
458,817 - -3.4
458,990 + +1.9
458,990 + +0.7
458,991 - -1.4
458,991 - -2.9
459,026 + -3.1
459,026 + +0.3
459,027 - -3.9
459,166 + -4.0
459,166 + -3.7
459,167 - -2.3
459,167 - -3.0
459,227 - -2.2
459,310 + ABZR87_RS02140 0.12 -0.4
459,310 + ABZR87_RS02140 0.12 -3.9
459,310 + ABZR87_RS02140 0.12 -4.0
459,311 - ABZR87_RS02140 0.12 -3.6
459,500 - ABZR87_RS02140 0.24 +0.6
459,500 - ABZR87_RS02140 0.24 -3.6
459,509 - ABZR87_RS02140 0.25 -3.1
459,509 - ABZR87_RS02140 0.25 -3.1
459,525 + ABZR87_RS02140 0.26 -3.4
459,525 + ABZR87_RS02140 0.26 -4.4
459,525 + ABZR87_RS02140 0.26 -2.9
459,526 - ABZR87_RS02140 0.26 -1.7
459,637 + ABZR87_RS02140 0.33 -3.7
459,637 + ABZR87_RS02140 0.33 -3.1
459,638 - ABZR87_RS02140 0.33 -2.6
459,638 - ABZR87_RS02140 0.33 -5.4
459,638 - ABZR87_RS02140 0.33 -3.2
459,638 - ABZR87_RS02140 0.33 -2.1
459,649 + ABZR87_RS02140 0.34 -4.1
459,649 + ABZR87_RS02140 0.34 -3.6
459,677 - ABZR87_RS02140 0.36 -3.1
459,677 - ABZR87_RS02140 0.36 -4.1
459,677 - ABZR87_RS02140 0.36 -3.1
459,677 - ABZR87_RS02140 0.36 -2.3

Or see this region's nucleotide sequence