Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01740

Experiment: Azelaic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01730 and ABZR87_RS01735 are separated by 30 nucleotidesABZR87_RS01735 and ABZR87_RS01740 are separated by 36 nucleotidesABZR87_RS01740 and ABZR87_RS01745 are separated by 563 nucleotides ABZR87_RS01730: ABZR87_RS01730 - alkaline phosphatase family protein, at 366,428 to 368,458 _RS01730 ABZR87_RS01735: ABZR87_RS01735 - hypothetical protein, at 368,489 to 368,689 _RS01735 ABZR87_RS01740: ABZR87_RS01740 - phosphocholine-specific phospholipase C, at 368,726 to 370,885 _RS01740 ABZR87_RS01745: ABZR87_RS01745 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 371,449 to 372,045 _RS01745 Position (kb) 368 369 370 371Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 367.754 kb on + strand, within ABZR87_RS01730at 367.754 kb on + strand, within ABZR87_RS01730at 367.755 kb on - strand, within ABZR87_RS01730at 367.755 kb on - strand, within ABZR87_RS01730at 367.755 kb on - strand, within ABZR87_RS01730at 367.755 kb on - strand, within ABZR87_RS01730at 367.755 kb on - strand, within ABZR87_RS01730at 367.757 kb on + strand, within ABZR87_RS01730at 367.757 kb on + strand, within ABZR87_RS01730at 367.757 kb on + strand, within ABZR87_RS01730at 367.758 kb on - strand, within ABZR87_RS01730at 367.758 kb on - strand, within ABZR87_RS01730at 367.758 kb on - strand, within ABZR87_RS01730at 367.898 kb on + strand, within ABZR87_RS01730at 367.898 kb on + strand, within ABZR87_RS01730at 367.899 kb on - strand, within ABZR87_RS01730at 367.899 kb on - strand, within ABZR87_RS01730at 368.021 kb on + strand, within ABZR87_RS01730at 368.021 kb on + strand, within ABZR87_RS01730at 368.021 kb on + strand, within ABZR87_RS01730at 368.021 kb on + strand, within ABZR87_RS01730at 368.021 kb on + strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.022 kb on - strand, within ABZR87_RS01730at 368.151 kb on - strand, within ABZR87_RS01730at 368.151 kb on - strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.195 kb on + strand, within ABZR87_RS01730at 368.196 kb on - strand, within ABZR87_RS01730at 368.196 kb on - strand, within ABZR87_RS01730at 368.321 kb on + strandat 368.321 kb on + strandat 368.321 kb on + strandat 368.321 kb on + strandat 368.321 kb on + strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.322 kb on - strandat 368.363 kb on + strandat 368.364 kb on - strandat 368.364 kb on - strandat 368.364 kb on - strandat 368.936 kb on + strandat 368.936 kb on + strandat 368.936 kb on + strandat 368.936 kb on + strandat 368.936 kb on + strandat 368.936 kb on + strandat 368.937 kb on - strandat 368.937 kb on - strandat 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.023 kb on + strand, within ABZR87_RS01740at 369.024 kb on - strand, within ABZR87_RS01740at 369.024 kb on - strand, within ABZR87_RS01740at 369.024 kb on - strand, within ABZR87_RS01740at 369.062 kb on + strand, within ABZR87_RS01740at 369.063 kb on - strand, within ABZR87_RS01740at 369.066 kb on - strand, within ABZR87_RS01740at 369.066 kb on - strand, within ABZR87_RS01740at 369.119 kb on + strand, within ABZR87_RS01740at 369.173 kb on + strand, within ABZR87_RS01740at 369.173 kb on + strand, within ABZR87_RS01740at 369.173 kb on + strand, within ABZR87_RS01740at 369.173 kb on + strand, within ABZR87_RS01740at 369.173 kb on + strand, within ABZR87_RS01740at 369.174 kb on - strand, within ABZR87_RS01740at 369.174 kb on - strand, within ABZR87_RS01740at 369.197 kb on + strand, within ABZR87_RS01740at 369.198 kb on - strand, within ABZR87_RS01740at 369.200 kb on + strand, within ABZR87_RS01740at 369.200 kb on + strand, within ABZR87_RS01740at 369.200 kb on + strand, within ABZR87_RS01740at 369.200 kb on + strand, within ABZR87_RS01740at 369.200 kb on + strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.201 kb on - strand, within ABZR87_RS01740at 369.263 kb on + strand, within ABZR87_RS01740at 369.264 kb on - strand, within ABZR87_RS01740at 369.264 kb on - strand, within ABZR87_RS01740at 369.396 kb on - strand, within ABZR87_RS01740at 369.396 kb on - strand, within ABZR87_RS01740at 369.396 kb on - strand, within ABZR87_RS01740at 369.411 kb on - strand, within ABZR87_RS01740at 369.564 kb on - strand, within ABZR87_RS01740at 369.707 kb on + strand, within ABZR87_RS01740at 369.707 kb on + strand, within ABZR87_RS01740at 369.708 kb on - strand, within ABZR87_RS01740at 369.708 kb on - strand, within ABZR87_RS01740at 369.708 kb on - strand, within ABZR87_RS01740at 369.879 kb on - strand, within ABZR87_RS01740at 369.929 kb on + strand, within ABZR87_RS01740at 369.950 kb on + strand, within ABZR87_RS01740at 369.950 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.977 kb on + strand, within ABZR87_RS01740at 369.978 kb on - strand, within ABZR87_RS01740at 369.978 kb on - strand, within ABZR87_RS01740at 369.978 kb on - strand, within ABZR87_RS01740at 370.094 kb on + strand, within ABZR87_RS01740at 370.403 kb on + strand, within ABZR87_RS01740at 370.403 kb on + strand, within ABZR87_RS01740at 370.440 kb on - strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.505 kb on + strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.506 kb on - strand, within ABZR87_RS01740at 370.610 kb on + strand, within ABZR87_RS01740at 370.611 kb on - strand, within ABZR87_RS01740at 370.634 kb on + strand, within ABZR87_RS01740at 370.634 kb on + strand, within ABZR87_RS01740at 370.635 kb on - strand, within ABZR87_RS01740at 370.635 kb on - strand, within ABZR87_RS01740at 370.635 kb on - strand, within ABZR87_RS01740at 370.781 kb on + strandat 370.782 kb on - strandat 370.782 kb on - strandat 370.889 kb on - strandat 370.889 kb on - strandat 370.901 kb on + strandat 370.901 kb on + strandat 371.063 kb on + strandat 371.064 kb on - strandat 371.275 kb on - strandat 371.275 kb on - strandat 371.316 kb on + strandat 371.465 kb on + strandat 371.588 kb on + strand, within ABZR87_RS01745at 371.630 kb on + strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.631 kb on - strand, within ABZR87_RS01745at 371.831 kb on + strand, within ABZR87_RS01745at 371.831 kb on + strand, within ABZR87_RS01745at 371.831 kb on + strand, within ABZR87_RS01745at 371.832 kb on - strand, within ABZR87_RS01745at 371.832 kb on - strand, within ABZR87_RS01745

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Per-strain Table

Position Strand Gene LocusTag Fraction Azelaic (C)
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367,754 + ABZR87_RS01730 0.65 +1.6
367,754 + ABZR87_RS01730 0.65 -0.7
367,755 - ABZR87_RS01730 0.65 -1.7
367,755 - ABZR87_RS01730 0.65 -0.2
367,755 - ABZR87_RS01730 0.65 -0.9
367,755 - ABZR87_RS01730 0.65 +0.8
367,755 - ABZR87_RS01730 0.65 -2.2
367,757 + ABZR87_RS01730 0.65 -3.1
367,757 + ABZR87_RS01730 0.65 -2.5
367,757 + ABZR87_RS01730 0.65 +0.3
367,758 - ABZR87_RS01730 0.65 -1.9
367,758 - ABZR87_RS01730 0.65 +0.1
367,758 - ABZR87_RS01730 0.65 +4.4
367,898 + ABZR87_RS01730 0.72 +0.7
367,898 + ABZR87_RS01730 0.72 +0.1
367,899 - ABZR87_RS01730 0.72 -3.6
367,899 - ABZR87_RS01730 0.72 -0.4
368,021 + ABZR87_RS01730 0.78 +0.3
368,021 + ABZR87_RS01730 0.78 +0.7
368,021 + ABZR87_RS01730 0.78 -1.2
368,021 + ABZR87_RS01730 0.78 -1.2
368,021 + ABZR87_RS01730 0.78 -1.2
368,022 - ABZR87_RS01730 0.78 -0.7
368,022 - ABZR87_RS01730 0.78 -2.0
368,022 - ABZR87_RS01730 0.78 +1.3
368,022 - ABZR87_RS01730 0.78 -0.0
368,022 - ABZR87_RS01730 0.78 -0.0
368,022 - ABZR87_RS01730 0.78 -2.4
368,022 - ABZR87_RS01730 0.78 -0.1
368,022 - ABZR87_RS01730 0.78 +0.3
368,151 - ABZR87_RS01730 0.85 +0.8
368,151 - ABZR87_RS01730 0.85 -1.6
368,195 + ABZR87_RS01730 0.87 -2.6
368,195 + ABZR87_RS01730 0.87 +0.3
368,195 + ABZR87_RS01730 0.87 -3.2
368,195 + ABZR87_RS01730 0.87 -0.8
368,195 + ABZR87_RS01730 0.87 -0.0
368,195 + ABZR87_RS01730 0.87 -0.0
368,195 + ABZR87_RS01730 0.87 -2.1
368,195 + ABZR87_RS01730 0.87 -2.7
368,196 - ABZR87_RS01730 0.87 +1.0
368,196 - ABZR87_RS01730 0.87 -0.4
368,321 + -1.7
368,321 + -0.1
368,321 + -1.3
368,321 + -1.1
368,321 + +0.6
368,322 - -2.2
368,322 - -2.5
368,322 - -0.1
368,322 - -1.4
368,322 - +0.9
368,322 - +1.2
368,322 - +1.2
368,322 - -1.1
368,322 - +1.3
368,322 - +0.2
368,322 - -3.8
368,322 - +0.1
368,322 - -0.7
368,363 + -1.7
368,364 - +1.5
368,364 - -0.6
368,364 - -0.7
368,936 + -0.2
368,936 + -0.7
368,936 + +1.7
368,936 + +0.4
368,936 + +0.6
368,936 + +0.2
368,937 - -0.2
368,937 - -0.3
369,023 + ABZR87_RS01740 0.14 +0.8
369,023 + ABZR87_RS01740 0.14 -1.6
369,023 + ABZR87_RS01740 0.14 -3.0
369,023 + ABZR87_RS01740 0.14 +0.4
369,023 + ABZR87_RS01740 0.14 +0.1
369,023 + ABZR87_RS01740 0.14 +0.6
369,023 + ABZR87_RS01740 0.14 -0.4
369,023 + ABZR87_RS01740 0.14 +0.4
369,023 + ABZR87_RS01740 0.14 +2.7
369,023 + ABZR87_RS01740 0.14 +1.4
369,023 + ABZR87_RS01740 0.14 +1.5
369,023 + ABZR87_RS01740 0.14 +0.5
369,024 - ABZR87_RS01740 0.14 +0.2
369,024 - ABZR87_RS01740 0.14 -2.8
369,024 - ABZR87_RS01740 0.14 +0.1
369,062 + ABZR87_RS01740 0.16 +0.8
369,063 - ABZR87_RS01740 0.16 +2.4
369,066 - ABZR87_RS01740 0.16 -3.1
369,066 - ABZR87_RS01740 0.16 -1.2
369,119 + ABZR87_RS01740 0.18 -4.0
369,173 + ABZR87_RS01740 0.21 -0.7
369,173 + ABZR87_RS01740 0.21 +0.4
369,173 + ABZR87_RS01740 0.21 -0.3
369,173 + ABZR87_RS01740 0.21 +1.0
369,173 + ABZR87_RS01740 0.21 -0.1
369,174 - ABZR87_RS01740 0.21 -0.3
369,174 - ABZR87_RS01740 0.21 -1.0
369,197 + ABZR87_RS01740 0.22 -0.7
369,198 - ABZR87_RS01740 0.22 +0.2
369,200 + ABZR87_RS01740 0.22 +0.1
369,200 + ABZR87_RS01740 0.22 -0.3
369,200 + ABZR87_RS01740 0.22 +0.4
369,200 + ABZR87_RS01740 0.22 +0.8
369,200 + ABZR87_RS01740 0.22 +0.4
369,201 - ABZR87_RS01740 0.22 +0.4
369,201 - ABZR87_RS01740 0.22 -1.2
369,201 - ABZR87_RS01740 0.22 -0.9
369,201 - ABZR87_RS01740 0.22 -0.3
369,201 - ABZR87_RS01740 0.22 -0.7
369,201 - ABZR87_RS01740 0.22 -2.1
369,201 - ABZR87_RS01740 0.22 -2.8
369,201 - ABZR87_RS01740 0.22 -0.1
369,263 + ABZR87_RS01740 0.25 +0.9
369,264 - ABZR87_RS01740 0.25 -1.7
369,264 - ABZR87_RS01740 0.25 +0.3
369,396 - ABZR87_RS01740 0.31 -2.3
369,396 - ABZR87_RS01740 0.31 +0.4
369,396 - ABZR87_RS01740 0.31 -1.6
369,411 - ABZR87_RS01740 0.32 -0.7
369,564 - ABZR87_RS01740 0.39 +0.2
369,707 + ABZR87_RS01740 0.45 -1.1
369,707 + ABZR87_RS01740 0.45 -0.3
369,708 - ABZR87_RS01740 0.45 -0.8
369,708 - ABZR87_RS01740 0.45 -0.9
369,708 - ABZR87_RS01740 0.45 +1.9
369,879 - ABZR87_RS01740 0.53 -1.9
369,929 + ABZR87_RS01740 0.56 -0.4
369,950 + ABZR87_RS01740 0.57 -3.9
369,950 + ABZR87_RS01740 0.57 -0.7
369,977 + ABZR87_RS01740 0.58 +0.8
369,977 + ABZR87_RS01740 0.58 -0.1
369,977 + ABZR87_RS01740 0.58 -0.2
369,977 + ABZR87_RS01740 0.58 +0.8
369,977 + ABZR87_RS01740 0.58 -2.3
369,977 + ABZR87_RS01740 0.58 +0.7
369,977 + ABZR87_RS01740 0.58 -0.4
369,977 + ABZR87_RS01740 0.58 +1.2
369,978 - ABZR87_RS01740 0.58 -1.7
369,978 - ABZR87_RS01740 0.58 +1.6
369,978 - ABZR87_RS01740 0.58 -0.3
370,094 + ABZR87_RS01740 0.63 +1.3
370,403 + ABZR87_RS01740 0.78 -2.1
370,403 + ABZR87_RS01740 0.78 -3.7
370,440 - ABZR87_RS01740 0.79 +1.2
370,505 + ABZR87_RS01740 0.82 +0.1
370,505 + ABZR87_RS01740 0.82 -0.4
370,505 + ABZR87_RS01740 0.82 -1.9
370,505 + ABZR87_RS01740 0.82 +0.6
370,505 + ABZR87_RS01740 0.82 -2.0
370,505 + ABZR87_RS01740 0.82 -3.7
370,505 + ABZR87_RS01740 0.82 +1.6
370,505 + ABZR87_RS01740 0.82 -3.3
370,506 - ABZR87_RS01740 0.82 -0.1
370,506 - ABZR87_RS01740 0.82 +0.3
370,506 - ABZR87_RS01740 0.82 -0.7
370,506 - ABZR87_RS01740 0.82 -0.5
370,506 - ABZR87_RS01740 0.82 +0.8
370,506 - ABZR87_RS01740 0.82 -1.4
370,506 - ABZR87_RS01740 0.82 +1.1
370,610 + ABZR87_RS01740 0.87 +0.5
370,611 - ABZR87_RS01740 0.87 +0.1
370,634 + ABZR87_RS01740 0.88 -1.4
370,634 + ABZR87_RS01740 0.88 -0.6
370,635 - ABZR87_RS01740 0.88 +0.9
370,635 - ABZR87_RS01740 0.88 -3.1
370,635 - ABZR87_RS01740 0.88 +0.3
370,781 + +2.1
370,782 - +0.3
370,782 - -2.3
370,889 - -0.0
370,889 - -1.2
370,901 + -0.2
370,901 + +0.9
371,063 + +0.2
371,064 - -0.4
371,275 - -1.1
371,275 - -1.9
371,316 + -1.1
371,465 + -0.5
371,588 + ABZR87_RS01745 0.23 +1.6
371,630 + ABZR87_RS01745 0.30 +1.4
371,631 - ABZR87_RS01745 0.30 -2.7
371,631 - ABZR87_RS01745 0.30 -1.4
371,631 - ABZR87_RS01745 0.30 -1.4
371,631 - ABZR87_RS01745 0.30 -0.4
371,831 + ABZR87_RS01745 0.64 -1.2
371,831 + ABZR87_RS01745 0.64 -2.5
371,831 + ABZR87_RS01745 0.64 +1.2
371,832 - ABZR87_RS01745 0.64 +1.4
371,832 - ABZR87_RS01745 0.64 +0.8

Or see this region's nucleotide sequence