Experiment: Azelaic 20 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE53_000402 and ABIE53_000403 are separated by 139 nucleotides ABIE53_000403 and ABIE53_000404 overlap by 4 nucleotides ABIE53_000404 and ABIE53_000405 are separated by 151 nucleotides
ABIE53_000402: ABIE53_000402 - penicillin-binding protein 2, at 433,062 to 435,581
_000402
ABIE53_000403: ABIE53_000403 - rod shape-determining protein MreD, at 435,721 to 436,233
_000403
ABIE53_000404: ABIE53_000404 - rod shape-determining protein MreC, at 436,230 to 437,354
_000404
ABIE53_000405: ABIE53_000405 - rod shape-determining protein MreB, at 437,506 to 438,549
_000405
Position (kb) 436
437
438 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.686 kb on - strand at 435.722 kb on + strand at 435.723 kb on - strand at 435.828 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 435.881 kb on - strand, within ABIE53_000403 at 436.218 kb on - strand at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.353 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 436.532 kb on - strand, within ABIE53_000404 at 437.508 kb on - strand at 437.508 kb on - strand at 437.514 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Azelaic 20 mM (C) remove 435,686 - -1.5 435,686 - -0.4 435,686 - -0.7 435,686 - +1.3 435,686 - +0.3 435,686 - -2.3 435,686 - +0.3 435,686 - -2.1 435,722 + +3.1 435,723 - +0.8 435,828 - ABIE53_000403 0.21 +5.5 435,881 - ABIE53_000403 0.31 +4.9 435,881 - ABIE53_000403 0.31 +1.4 435,881 - ABIE53_000403 0.31 +3.4 435,881 - ABIE53_000403 0.31 +2.7 435,881 - ABIE53_000403 0.31 +2.3 436,218 - +1.5 436,353 - ABIE53_000404 0.11 +2.6 436,353 - ABIE53_000404 0.11 +0.7 436,353 - ABIE53_000404 0.11 -0.7 436,353 - ABIE53_000404 0.11 -0.5 436,353 - ABIE53_000404 0.11 +1.1 436,353 - ABIE53_000404 0.11 +2.1 436,532 - ABIE53_000404 0.27 -1.0 436,532 - ABIE53_000404 0.27 -0.5 436,532 - ABIE53_000404 0.27 +1.0 436,532 - ABIE53_000404 0.27 +0.5 436,532 - ABIE53_000404 0.27 +0.8 436,532 - ABIE53_000404 0.27 +0.5 436,532 - ABIE53_000404 0.27 +0.9 436,532 - ABIE53_000404 0.27 +1.9 436,532 - ABIE53_000404 0.27 +0.6 436,532 - ABIE53_000404 0.27 +0.7 436,532 - ABIE53_000404 0.27 +1.0 436,532 - ABIE53_000404 0.27 +0.8 436,532 - ABIE53_000404 0.27 +3.3 437,508 - +1.0 437,508 - +1.5 437,514 - -2.3
Or see this region's nucleotide sequence