Strain Fitness in Sinorhizobium meliloti 1021 around SMc01034

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01032 and SMc01033 are separated by 56 nucleotidesSMc01033 and SMc01034 overlap by 4 nucleotidesSMc01034 and SMc01035 are separated by 17 nucleotides SMc01032: SMc01032 - dihydrolipoamide S-acetyltransferase, at 1,558,406 to 1,559,749 SMc01032 SMc01033: SMc01033 - arylesterase, at 1,559,806 to 1,560,447 SMc01033 SMc01034: SMc01034 - hypothetical protein, at 1,560,444 to 1,561,031 SMc01034 SMc01035: SMc01035 - dihydrolipoamide dehydrogenase, at 1,561,049 to 1,562,494 SMc01035 Position (kb) 1560 1561 1562Strain fitness (log2 ratio) -1 0 1at 1559.824 kb on + strandat 1560.693 kb on + strand, within SMc01034at 1560.816 kb on + strand, within SMc01034

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,559,824 + +0.9
1,560,693 + SMc01034 0.42 -0.1
1,560,816 + SMc01034 0.63 -1.6

Or see this region's nucleotide sequence