Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00796 and SMc00797 are separated by 240 nucleotides SMc00797 and SMc00798 are separated by 154 nucleotides SMc00798 and SMc00799 are separated by 24 nucleotides
SMc00796: SMc00796 - hypothetical protein, at 817,061 to 817,225
SMc00796
SMc00797: SMc00797 - oxidoreductase, at 817,466 to 818,719
SMc00797
SMc00798: SMc00798 - hypothetical protein, at 818,874 to 819,122
SMc00798
SMc00799: SMc00799 - hypothetical protein, at 819,147 to 819,719
SMc00799
Position (kb) 817
818
819 Strain fitness (log2 ratio) -2
-1
0
1
2 at 816.550 kb on + strand at 816.551 kb on - strand at 816.551 kb on - strand at 816.646 kb on + strand at 816.705 kb on + strand at 816.749 kb on + strand at 816.750 kb on - strand at 816.750 kb on - strand at 816.750 kb on - strand at 816.752 kb on - strand at 816.752 kb on - strand at 816.783 kb on + strand at 816.814 kb on + strand at 816.827 kb on + strand at 816.911 kb on - strand at 816.911 kb on - strand at 816.912 kb on + strand at 817.056 kb on - strand at 817.067 kb on + strand at 817.067 kb on + strand at 817.070 kb on + strand at 817.071 kb on - strand at 817.179 kb on + strand, within SMc00796 at 817.180 kb on - strand, within SMc00796 at 817.180 kb on - strand, within SMc00796 at 817.180 kb on - strand, within SMc00796 at 817.200 kb on + strand, within SMc00796 at 817.479 kb on + strand at 817.479 kb on + strand at 817.480 kb on - strand at 817.480 kb on - strand at 817.589 kb on + strand at 817.608 kb on + strand, within SMc00797 at 817.609 kb on - strand, within SMc00797 at 817.609 kb on - strand, within SMc00797 at 817.697 kb on + strand, within SMc00797 at 817.698 kb on - strand, within SMc00797 at 817.779 kb on + strand, within SMc00797 at 817.780 kb on - strand, within SMc00797 at 817.780 kb on - strand, within SMc00797 at 817.791 kb on - strand, within SMc00797 at 817.919 kb on + strand, within SMc00797 at 817.919 kb on + strand, within SMc00797 at 817.920 kb on - strand, within SMc00797 at 817.921 kb on + strand, within SMc00797 at 817.922 kb on - strand, within SMc00797 at 817.922 kb on - strand, within SMc00797 at 817.922 kb on - strand, within SMc00797 at 818.084 kb on + strand, within SMc00797 at 818.084 kb on + strand, within SMc00797 at 818.085 kb on - strand, within SMc00797 at 818.085 kb on - strand, within SMc00797 at 818.085 kb on - strand, within SMc00797 at 818.085 kb on - strand, within SMc00797 at 818.085 kb on - strand, within SMc00797 at 818.094 kb on - strand, within SMc00797 at 818.149 kb on + strand, within SMc00797 at 818.149 kb on + strand, within SMc00797 at 818.262 kb on - strand, within SMc00797 at 818.303 kb on + strand, within SMc00797 at 818.304 kb on - strand, within SMc00797 at 818.560 kb on + strand, within SMc00797 at 818.717 kb on + strand at 818.744 kb on - strand at 819.159 kb on + strand at 819.160 kb on - strand at 819.162 kb on - strand at 819.216 kb on - strand, within SMc00799 at 819.216 kb on - strand, within SMc00799 at 819.572 kb on + strand, within SMc00799 at 819.573 kb on - strand, within SMc00799 at 819.573 kb on - strand, within SMc00799 at 819.674 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 816,550 + +0.8 816,551 - -0.8 816,551 - -2.0 816,646 + -0.3 816,705 + +0.1 816,749 + -0.1 816,750 - -0.2 816,750 - -0.8 816,750 - -1.4 816,752 - -0.9 816,752 - -0.0 816,783 + -0.7 816,814 + -0.2 816,827 + -1.4 816,911 - -0.2 816,911 - +1.0 816,912 + +0.9 817,056 - +0.2 817,067 + -1.4 817,067 + +2.6 817,070 + +1.8 817,071 - -0.3 817,179 + SMc00796 0.72 -1.2 817,180 - SMc00796 0.72 +0.1 817,180 - SMc00796 0.72 +0.3 817,180 - SMc00796 0.72 -0.1 817,200 + SMc00796 0.84 -1.0 817,479 + -1.0 817,479 + +0.6 817,480 - -0.8 817,480 - +1.5 817,589 + -0.2 817,608 + SMc00797 0.11 -0.4 817,609 - SMc00797 0.11 +0.6 817,609 - SMc00797 0.11 +0.3 817,697 + SMc00797 0.18 +0.0 817,698 - SMc00797 0.19 -0.8 817,779 + SMc00797 0.25 -0.6 817,780 - SMc00797 0.25 +0.3 817,780 - SMc00797 0.25 -0.5 817,791 - SMc00797 0.26 +0.5 817,919 + SMc00797 0.36 +1.0 817,919 + SMc00797 0.36 +0.6 817,920 - SMc00797 0.36 -1.4 817,921 + SMc00797 0.36 +0.1 817,922 - SMc00797 0.36 +2.0 817,922 - SMc00797 0.36 +0.9 817,922 - SMc00797 0.36 +0.2 818,084 + SMc00797 0.49 -1.2 818,084 + SMc00797 0.49 +0.6 818,085 - SMc00797 0.49 -0.9 818,085 - SMc00797 0.49 -0.3 818,085 - SMc00797 0.49 -1.1 818,085 - SMc00797 0.49 -0.3 818,085 - SMc00797 0.49 +0.7 818,094 - SMc00797 0.50 +0.4 818,149 + SMc00797 0.54 +0.2 818,149 + SMc00797 0.54 +0.1 818,262 - SMc00797 0.63 -0.4 818,303 + SMc00797 0.67 -1.5 818,304 - SMc00797 0.67 -0.0 818,560 + SMc00797 0.87 +0.6 818,717 + +0.0 818,744 - -0.9 819,159 + -0.5 819,160 - -0.1 819,162 - +0.0 819,216 - SMc00799 0.12 -0.9 819,216 - SMc00799 0.12 +0.0 819,572 + SMc00799 0.74 -0.8 819,573 - SMc00799 0.74 +0.7 819,573 - SMc00799 0.74 -0.2 819,674 - +0.6
Or see this region's nucleotide sequence