Strain Fitness in Sinorhizobium meliloti 1021 around SMc00107

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00106 and SMc00043 are separated by 232 nucleotidesSMc00043 and SMc00107 are separated by 65 nucleotidesSMc00107 and SMc00044 are separated by 127 nucleotidesSMc00044 and SMc00045 are separated by 204 nucleotides SMc00106: SMc00106 - hypothetical protein, at 1,066,390 to 1,066,800 SMc00106 SMc00043: SMc00043 - superoxide dismutase Fe protein, at 1,067,033 to 1,067,635 SMc00043 SMc00107: SMc00107 - transcriptional regulator, at 1,067,701 to 1,068,414 SMc00107 SMc00044: SMc00044 - amino acid efflux protein, at 1,068,542 to 1,069,180 SMc00044 SMc00045: SMc00045 - cytochrome C signal peptide protein, at 1,069,385 to 1,069,834 SMc00045 Position (kb) 1067 1068 1069Strain fitness (log2 ratio) -1 0 1 2at 1066.845 kb on + strandat 1066.845 kb on + strandat 1066.845 kb on + strandat 1066.845 kb on + strandat 1066.845 kb on + strandat 1066.845 kb on + strandat 1066.846 kb on - strandat 1066.846 kb on - strandat 1066.846 kb on - strandat 1066.846 kb on - strandat 1066.846 kb on - strandat 1066.846 kb on - strandat 1066.851 kb on - strandat 1066.851 kb on - strandat 1066.851 kb on - strandat 1066.851 kb on - strandat 1066.851 kb on - strandat 1066.916 kb on + strandat 1066.978 kb on + strandat 1066.978 kb on + strandat 1066.978 kb on + strandat 1066.978 kb on + strandat 1066.978 kb on + strandat 1066.979 kb on - strandat 1067.633 kb on + strandat 1067.634 kb on - strandat 1067.646 kb on + strandat 1067.891 kb on + strand, within SMc00107at 1067.891 kb on + strand, within SMc00107at 1067.894 kb on + strand, within SMc00107at 1068.237 kb on + strand, within SMc00107at 1068.238 kb on - strand, within SMc00107at 1068.239 kb on + strand, within SMc00107at 1068.240 kb on - strand, within SMc00107at 1068.240 kb on - strand, within SMc00107at 1068.426 kb on + strandat 1068.469 kb on - strandat 1068.788 kb on + strand, within SMc00044at 1068.789 kb on - strand, within SMc00044at 1068.789 kb on - strand, within SMc00044at 1068.920 kb on + strand, within SMc00044at 1068.920 kb on + strand, within SMc00044at 1068.920 kb on + strand, within SMc00044at 1068.920 kb on + strand, within SMc00044at 1068.921 kb on - strand, within SMc00044at 1068.921 kb on - strand, within SMc00044at 1069.031 kb on + strand, within SMc00044at 1069.032 kb on - strand, within SMc00044at 1069.032 kb on - strand, within SMc00044at 1069.152 kb on + strandat 1069.153 kb on - strandat 1069.259 kb on - strandat 1069.307 kb on + strandat 1069.315 kb on + strandat 1069.316 kb on - strandat 1069.354 kb on + strandat 1069.395 kb on + strandat 1069.396 kb on - strandat 1069.405 kb on + strandat 1069.406 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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1,066,845 + -0.4
1,066,845 + -0.2
1,066,845 + -0.4
1,066,845 + +0.0
1,066,845 + -0.4
1,066,845 + +0.4
1,066,846 - +0.4
1,066,846 - +1.3
1,066,846 - -0.3
1,066,846 - +0.1
1,066,846 - +1.7
1,066,846 - +0.3
1,066,851 - -0.4
1,066,851 - +0.9
1,066,851 - +0.8
1,066,851 - -0.1
1,066,851 - -1.1
1,066,916 + -0.2
1,066,978 + +0.3
1,066,978 + +0.7
1,066,978 + +0.0
1,066,978 + -1.0
1,066,978 + +2.1
1,066,979 - -1.0
1,067,633 + -0.1
1,067,634 - +1.1
1,067,646 + -0.3
1,067,891 + SMc00107 0.27 -1.1
1,067,891 + SMc00107 0.27 -0.4
1,067,894 + SMc00107 0.27 -0.2
1,068,237 + SMc00107 0.75 -0.9
1,068,238 - SMc00107 0.75 +0.5
1,068,239 + SMc00107 0.75 -1.0
1,068,240 - SMc00107 0.75 -0.5
1,068,240 - SMc00107 0.75 -0.7
1,068,426 + -0.1
1,068,469 - +0.2
1,068,788 + SMc00044 0.38 +0.0
1,068,789 - SMc00044 0.39 +1.0
1,068,789 - SMc00044 0.39 +0.0
1,068,920 + SMc00044 0.59 +1.1
1,068,920 + SMc00044 0.59 -0.7
1,068,920 + SMc00044 0.59 -0.1
1,068,920 + SMc00044 0.59 -0.2
1,068,921 - SMc00044 0.59 -0.8
1,068,921 - SMc00044 0.59 +0.3
1,069,031 + SMc00044 0.77 +0.7
1,069,032 - SMc00044 0.77 +0.3
1,069,032 - SMc00044 0.77 -0.4
1,069,152 + -1.1
1,069,153 - +0.1
1,069,259 - -0.2
1,069,307 + +0.2
1,069,315 + +0.2
1,069,316 - +0.7
1,069,354 + +0.6
1,069,395 + -0.5
1,069,396 - -0.1
1,069,405 + +0.7
1,069,406 - -1.0

Or see this region's nucleotide sequence