Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00106 and SMc00043 are separated by 232 nucleotides SMc00043 and SMc00107 are separated by 65 nucleotides SMc00107 and SMc00044 are separated by 127 nucleotides SMc00044 and SMc00045 are separated by 204 nucleotides
SMc00106: SMc00106 - hypothetical protein, at 1,066,390 to 1,066,800
SMc00106
SMc00043: SMc00043 - superoxide dismutase Fe protein, at 1,067,033 to 1,067,635
SMc00043
SMc00107: SMc00107 - transcriptional regulator, at 1,067,701 to 1,068,414
SMc00107
SMc00044: SMc00044 - amino acid efflux protein, at 1,068,542 to 1,069,180
SMc00044
SMc00045: SMc00045 - cytochrome C signal peptide protein, at 1,069,385 to 1,069,834
SMc00045
Position (kb)
1067
1068
1069 Strain fitness (log2 ratio)
-1
0
1
2 at 1066.845 kb on + strand at 1066.845 kb on + strand at 1066.845 kb on + strand at 1066.845 kb on + strand at 1066.845 kb on + strand at 1066.845 kb on + strand at 1066.846 kb on - strand at 1066.846 kb on - strand at 1066.846 kb on - strand at 1066.846 kb on - strand at 1066.846 kb on - strand at 1066.846 kb on - strand at 1066.851 kb on - strand at 1066.851 kb on - strand at 1066.851 kb on - strand at 1066.851 kb on - strand at 1066.851 kb on - strand at 1066.916 kb on + strand at 1066.978 kb on + strand at 1066.978 kb on + strand at 1066.978 kb on + strand at 1066.978 kb on + strand at 1066.978 kb on + strand at 1066.979 kb on - strand at 1067.633 kb on + strand at 1067.634 kb on - strand at 1067.646 kb on + strand at 1067.891 kb on + strand, within SMc00107 at 1067.891 kb on + strand, within SMc00107 at 1067.894 kb on + strand, within SMc00107 at 1068.237 kb on + strand, within SMc00107 at 1068.238 kb on - strand, within SMc00107 at 1068.239 kb on + strand, within SMc00107 at 1068.240 kb on - strand, within SMc00107 at 1068.240 kb on - strand, within SMc00107 at 1068.426 kb on + strand at 1068.469 kb on - strand at 1068.788 kb on + strand, within SMc00044 at 1068.789 kb on - strand, within SMc00044 at 1068.789 kb on - strand, within SMc00044 at 1068.920 kb on + strand, within SMc00044 at 1068.920 kb on + strand, within SMc00044 at 1068.920 kb on + strand, within SMc00044 at 1068.920 kb on + strand, within SMc00044 at 1068.921 kb on - strand, within SMc00044 at 1068.921 kb on - strand, within SMc00044 at 1069.031 kb on + strand, within SMc00044 at 1069.032 kb on - strand, within SMc00044 at 1069.032 kb on - strand, within SMc00044 at 1069.152 kb on + strand at 1069.153 kb on - strand at 1069.259 kb on - strand at 1069.307 kb on + strand at 1069.315 kb on + strand at 1069.316 kb on - strand at 1069.354 kb on + strand at 1069.395 kb on + strand at 1069.396 kb on - strand at 1069.405 kb on + strand at 1069.406 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 1,066,845 + -0.4 1,066,845 + -0.2 1,066,845 + -0.4 1,066,845 + +0.0 1,066,845 + -0.4 1,066,845 + +0.4 1,066,846 - +0.4 1,066,846 - +1.3 1,066,846 - -0.3 1,066,846 - +0.1 1,066,846 - +1.7 1,066,846 - +0.3 1,066,851 - -0.4 1,066,851 - +0.9 1,066,851 - +0.8 1,066,851 - -0.1 1,066,851 - -1.1 1,066,916 + -0.2 1,066,978 + +0.3 1,066,978 + +0.7 1,066,978 + +0.0 1,066,978 + -1.0 1,066,978 + +2.1 1,066,979 - -1.0 1,067,633 + -0.1 1,067,634 - +1.1 1,067,646 + -0.3 1,067,891 + SMc00107 0.27 -1.1 1,067,891 + SMc00107 0.27 -0.4 1,067,894 + SMc00107 0.27 -0.2 1,068,237 + SMc00107 0.75 -0.9 1,068,238 - SMc00107 0.75 +0.5 1,068,239 + SMc00107 0.75 -1.0 1,068,240 - SMc00107 0.75 -0.5 1,068,240 - SMc00107 0.75 -0.7 1,068,426 + -0.1 1,068,469 - +0.2 1,068,788 + SMc00044 0.38 +0.0 1,068,789 - SMc00044 0.39 +1.0 1,068,789 - SMc00044 0.39 +0.0 1,068,920 + SMc00044 0.59 +1.1 1,068,920 + SMc00044 0.59 -0.7 1,068,920 + SMc00044 0.59 -0.1 1,068,920 + SMc00044 0.59 -0.2 1,068,921 - SMc00044 0.59 -0.8 1,068,921 - SMc00044 0.59 +0.3 1,069,031 + SMc00044 0.77 +0.7 1,069,032 - SMc00044 0.77 +0.3 1,069,032 - SMc00044 0.77 -0.4 1,069,152 + -1.1 1,069,153 - +0.1 1,069,259 - -0.2 1,069,307 + +0.2 1,069,315 + +0.2 1,069,316 - +0.7 1,069,354 + +0.6 1,069,395 + -0.5 1,069,396 - -0.1 1,069,405 + +0.7 1,069,406 - -1.0
Or see this region's nucleotide sequence