Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1364 and SMa5008 are separated by 269 nucleotides SMa5008 and SMa1365 are separated by 192 nucleotides SMa1365 and SMa1367 are separated by 154 nucleotides SMa1367 and SMa1368 are separated by 7 nucleotides
SMa1364: SMa1364 - ABC transporter substrate-binding protein, at 748,748 to 749,968
SMa1364
SMa5008: SMa5008 - hypothetical protein, at 750,238 to 750,459
SMa5008
SMa1365: SMa1365 - ATP-binding protein, at 750,652 to 751,026
SMa1365
SMa1367: SMa1367 - short chain alcohol dehydrogenase-related dehydrogenase, at 751,181 to 751,939
SMa1367
SMa1368: SMa1368 - hypothetical protein, at 751,947 to 752,672
SMa1368
Position (kb) 750
751
752 Strain fitness (log2 ratio) -2
-1
0
1 at 749.784 kb on - strand, within SMa1364 at 749.793 kb on + strand, within SMa1364 at 749.799 kb on - strand, within SMa1364 at 750.038 kb on + strand at 750.042 kb on + strand at 750.042 kb on + strand at 750.042 kb on + strand at 750.042 kb on + strand at 750.043 kb on - strand at 750.043 kb on - strand at 750.043 kb on - strand at 750.043 kb on - strand at 750.043 kb on - strand at 750.043 kb on - strand at 750.078 kb on + strand at 750.099 kb on + strand at 750.100 kb on - strand at 750.108 kb on - strand at 750.110 kb on - strand at 750.220 kb on + strand at 750.240 kb on - strand at 750.280 kb on + strand, within SMa5008 at 750.281 kb on - strand, within SMa5008 at 750.281 kb on - strand, within SMa5008 at 750.281 kb on - strand, within SMa5008 at 750.281 kb on - strand, within SMa5008 at 750.303 kb on + strand, within SMa5008 at 750.303 kb on + strand, within SMa5008 at 750.304 kb on - strand, within SMa5008 at 750.320 kb on + strand, within SMa5008 at 750.332 kb on + strand, within SMa5008 at 750.333 kb on - strand, within SMa5008 at 750.333 kb on - strand, within SMa5008 at 750.451 kb on + strand at 750.452 kb on - strand at 750.478 kb on - strand at 750.541 kb on - strand at 750.868 kb on + strand, within SMa1365 at 750.868 kb on + strand, within SMa1365 at 750.953 kb on - strand, within SMa1365 at 751.061 kb on - strand at 751.183 kb on - strand at 751.228 kb on + strand at 751.228 kb on + strand at 751.229 kb on - strand at 751.229 kb on - strand at 751.394 kb on + strand, within SMa1367 at 751.395 kb on - strand, within SMa1367 at 751.814 kb on + strand, within SMa1367
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 749,784 - SMa1364 0.85 -0.8 749,793 + SMa1364 0.86 +0.5 749,799 - SMa1364 0.86 +0.1 750,038 + -1.1 750,042 + -0.0 750,042 + +1.3 750,042 + +0.0 750,042 + -0.4 750,043 - -0.1 750,043 - -0.6 750,043 - -0.2 750,043 - -0.7 750,043 - -0.2 750,043 - -0.0 750,078 + -1.1 750,099 + -0.4 750,100 - +0.7 750,108 - -1.2 750,110 - +0.2 750,220 + -0.0 750,240 - +0.1 750,280 + SMa5008 0.19 +0.8 750,281 - SMa5008 0.19 -0.8 750,281 - SMa5008 0.19 +0.9 750,281 - SMa5008 0.19 -0.3 750,281 - SMa5008 0.19 -0.4 750,303 + SMa5008 0.29 +0.8 750,303 + SMa5008 0.29 +0.4 750,304 - SMa5008 0.30 -1.9 750,320 + SMa5008 0.37 +0.0 750,332 + SMa5008 0.42 +0.8 750,333 - SMa5008 0.43 +0.6 750,333 - SMa5008 0.43 -1.2 750,451 + +0.2 750,452 - +0.8 750,478 - -0.1 750,541 - +1.0 750,868 + SMa1365 0.58 +0.6 750,868 + SMa1365 0.58 +0.3 750,953 - SMa1365 0.80 +0.9 751,061 - -0.5 751,183 - -0.5 751,228 + +0.2 751,228 + -0.7 751,229 - -0.4 751,229 - -0.5 751,394 + SMa1367 0.28 -0.9 751,395 - SMa1367 0.28 +0.6 751,814 + SMa1367 0.83 +0.1
Or see this region's nucleotide sequence